CRBS cdeep3m issues - Githubissues

CRBS / cdeep3m

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prediction failed (octave error)

#78 jawonGim opened 3 years ago
6
How to input muti-channel label image,such as(width*height*channel) and How to use label_class_selection.prototxt

#77 TITC opened 4 years ago
0
dataset used in training

#76 krishnakatyal closed 4 years ago
1
architecture used?

#75 krishnakatyal closed 4 years ago
1
Update get_updated_ami_mappings.py

#74 redistributer closed 4 years ago
0
2D data

#73 albert597 closed 4 years ago
3
How to obtain the training accuracy from the log file?

#72 cakuba closed 4 years ago
4
Error when running runprediction.sh on a local build. Any help is appreciated!

#71 camcondylis closed 4 years ago
8
Update caffepredict.sh

#70 redistributer closed 5 years ago
0
Blank prediction results

#69 camcondylis closed 5 years ago
1
Update caffepredict.sh

#68 redistributer closed 5 years ago
0
Update caffepredict.sh

#67 redistributer closed 5 years ago
0
caffepredict doesn't parrellelize properly

#66 MatthewBM closed 5 years ago
1
Unable to plot validation loss

#65 cakuba closed 5 years ago
1
checkpoint_nobinary(imgstack)

#64 camcondylis closed 5 years ago
14
Can we apply your model on different applications?

#63 Ayanzadeh93 closed 5 years ago
1
Image binarization and exclusion zone

#62 cakuba closed 5 years ago
4
Watershed error

#61 MatthewBM closed 5 years ago
2
preprocessing problem

#60 orinp closed 5 years ago
3
runprediction not working on local build

#59 JurgenKriel closed 5 years ago
4
Add validation data to training failed

#58 cakuba closed 5 years ago
3
HDF5 error with Ubuntu 18.04 LTE

#57 haberlmatt closed 4 years ago
4
/usr/bin/time not available on all systems

#56 coleslaw481 closed 4 years ago
0
Updated link in README.md to point to patched version of custom caffe

#55 coleslaw481 closed 5 years ago
0
Using the pretrained model at /sbem/mitochrondria/xy5.9nm40nmz/30000iterations_train_out failed

#54 cakuba closed 5 years ago
7
Create cdeep3m-1.6.2.def

#53 redistributer closed 5 years ago
0
Modify cloudformation template to install IMOD

#52 coleslaw481 closed 5 years ago
1
Add --gpu option to runprediction.sh

#51 coleslaw481 closed 5 years ago
1
readme

#50 MatthewBM closed 5 years ago
1
EnsemblePredictions.m fails when called by runprediction.sh if there is only 1 model

#49 coleslaw481 closed 5 years ago
2
Add --gpu option to runtraining.sh

#48 coleslaw481 closed 5 years ago
2
--1fmonly flag causing error when used passed to runtraining.sh

#47 coleslaw481 closed 5 years ago
2
problems executing the example scripts

#46 damsport11 closed 5 years ago
21
Modify runprediction.sh to NOT delete png files under model directories

#45 coleslaw481 closed 5 years ago
1
Remove quotes around tail command printed to user in runprediction.sh

#44 coleslaw481 closed 5 years ago
1
remove Pkg folders

#43 haberlmatt closed 5 years ago
1
3fm

#42 ltindall closed 6 years ago
0
Fix 3fm model to have the proper z dimension

#41 ltindall closed 6 years ago
0
Remove augmented h5 files once they are predicted

#40 haberlmatt closed 6 years ago
1
Stitching

#39 haberlmatt closed 6 years ago
0
Enable parallel training

#38 coleslaw481 closed 6 years ago
0
Script to determine effect of augmentation on accuracy

#37 haberlmatt closed 6 years ago
0
Switch runprediction.sh pipeline to augment data on the fly

#36 coleslaw481 closed 6 years ago
0
Copy over VERSION file to train and predict jobs

#35 coleslaw481 closed 6 years ago
1
Create script to parse out loss rate and other values from log files of prediction

#34 coleslaw481 closed 6 years ago
0
Enable parallelism in prediction

#33 coleslaw481 closed 6 years ago
0
update prediction to run with less then 16 augmented variations of the data

#32 coleslaw481 closed 6 years ago
1
update default number of iterations in runtraining.sh to 30000

#31 coleslaw481 closed 6 years ago
2
Update runtraining.sh with custom flags to allow caller to adjust learning rate etc.

#30 coleslaw481 closed 6 years ago
1
Add invocation to EnsemblePredictions.m for end of prediction

#29 coleslaw481 closed 6 years ago
1