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CVUA-RRW / FooDMe

A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
https://cvua-rrw.github.io/FooDMe
BSD 3-Clause "New" or "Revised" License
4 stars 1 forks source link

Upgrade taxidTools to version 2 #20

Closed gregdenay closed 2 years ago

gregdenay commented 2 years ago

taxidTools now has to be installed in the snakemake env with either conda (conda-forge pending) or pip to execute the pipeline. Updated all scripts to use the new taxidTools version. Still needs some linting.

gregdenay commented 2 years ago

There seems to be a problem with Cluster merging.