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CVUA-RRW / FooDMe

A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
https://cvua-rrw.github.io/FooDMe
BSD 3-Clause "New" or "Revised" License
4 stars 1 forks source link
bioinformatics food-authenticity food-monitoring metabarcoding ngs ngs-pipeline pipeline public-health snakemake targeted-sequencing workflow

readme

FooDMe - A pipeline for Food DNA Metabarcoding

CI License GitHub release (latest by date) DOI Snakemake

Support for FooDMe has ended ! Check out FooDMe2

FooDMe2 is a complete rewrite of FooDMe. We designed FooDMe 2 to be more flexible and take away some of the complexity encountered in FooDMe 1. This not only concerns the installation procedure, which is vastly streamlined now, but also the process of configuring and starting individual analysis runs. The new implementation also maes it easier to deploy, maintain, and to add additonal functionalities in the future.