Taxonomy dump files are now parsed only once

CVUA-RRW / FooDMe

A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.

https://cvua-rrw.github.io/FooDMe

BSD 3-Clause "New" or "Revised" License

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Taxonomy dump files are now parsed only once #25

Closed gregdenay closed 2 years ago

gregdenay commented 2 years ago

filtered and saved as JSON. Perfomance improved by ca 1 mn per sample, depending on the level of taxonomy filtering. Fixed GH version parsing with lw tags.

[x] Title of this PR is meaningful
[x] Comprehensive description of the changes
[x] Link eventual issues
[x] Test modifications
[x] If there are new parameters: update foodme.py
[x] If there are new parameters: update config template
[x] Update README if nescessary
[x] Add modifications to changelog.md