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CVUA-RRW / FooDMe

A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
https://cvua-rrw.github.io/FooDMe
BSD 3-Clause "New" or "Revised" License
4 stars 1 forks source link

Deploy with minimal env requirements #36

Closed gregdenay closed 2 years ago

gregdenay commented 2 years ago

As of now taxidtools needs to be installed in the base environement, which porevents deployement with sankedeploy. Taxidtools should be a requirement on a per-rule basis and managed in conda environements.

May need to transform some run blocks in script or shell blocks.

gregdenay commented 2 years ago

Fixed in #37