CVUA-RRW / FooDMe

A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.
https://cvua-rrw.github.io/FooDMe
BSD 3-Clause "New" or "Revised" License
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Add option to switch from 'megablast' to 'blastn' #66

Closed gregdenay closed 10 months ago

gregdenay commented 10 months ago

This version introduces a new parameter use_blastn, which enables user to switch from the default 'megablast' search for cluster sequence matching to a search using the 'blastn' algorithm. This can help find sequences with lower homology than what is possible with the megablast algorithm.

Configuration files fron the 1.6.x versions can be updated by adding the following line:

use_blastn: False

Checklist

gregdenay commented 10 months ago

Not the change that is actually nescessary to fix the low-complexity pb