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CellProfiler
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CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
http://plugins.cellprofiler.org/
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Add possibility to use custom UNet model in ClassifyPixels-Unet
#57
cells2numbers
closed
1 year ago
1
Test / Add GPU support for ClasssifyPixels-Unet module
#56
cells2numbers
closed
1 year ago
1
Unet4nuclei
#55
cells2numbers
closed
6 years ago
2
3D Declumping module
#54
AetherUnbound
closed
6 years ago
0
Merge objects shouldn't be considering "self" pixels
#53
AetherUnbound
closed
6 years ago
0
Link broken
#52
dlogan
closed
1 year ago
2
Sholl analysis
#51
0x00b1
closed
6 years ago
0
Make keeping lonely objects the default behavior in MergeObjects
#50
AetherUnbound
closed
6 years ago
0
[WIP] RunImageJ
#49
mcquin
closed
6 years ago
2
Delete measureimagefocus_README.md
#48
jhung0
closed
6 years ago
0
Update measureimagefocus.py
#47
jhung0
closed
6 years ago
1
Update measureimagefocus_README.md
#46
jhung0
closed
6 years ago
0
Update measureimagefocus_README.md
#45
jhung0
closed
6 years ago
0
Unet4nuclei
#44
cells2numbers
closed
6 years ago
0
change centers and recognize "missing" slices
#43
karhohs
closed
6 years ago
0
[WIP] Track particles
#42
mcquin
closed
6 years ago
1
ConvertOutlinesToObjects
#41
mcquin
closed
6 years ago
0
Create ConvertOutlinesToObjects as a plugin
#40
AnneCarpenter
closed
6 years ago
0
Add capacity for advanced settings tuning in Active Contour Model
#39
AetherUnbound
closed
6 years ago
0
Fix imports for ExportToCellH5
#38
mcquin
closed
6 years ago
0
Set module_name for GammaCorrection, HistogramEqualization
#37
mcquin
closed
6 years ago
0
Update imports for MeasurePopulationContext
#36
mcquin
closed
6 years ago
0
Remove MedialAxis
#35
mcquin
closed
6 years ago
0
Allow option to not remove objects below threshold with no neighbors
#34
AetherUnbound
closed
6 years ago
0
MergeObjects will remove objects which are smaller than the Minimum object size.
#33
derekthirstrup
closed
6 years ago
1
blobdetection.py - removed unsupported args from function call to figure.subplot_imshow
#32
GenevieveBuckley
closed
6 years ago
0
Minor style corrections for MergeObjects
#31
AetherUnbound
closed
6 years ago
0
Add MergeObjects module
#30
AetherUnbound
closed
6 years ago
0
Is the MedialAxis plugin now a canonical module in CellProfiler?
#29
karhohs
closed
6 years ago
1
measure_population_context.py does not import correctly
#28
karhohs
closed
6 years ago
0
gammacorrection.py and histogramequalization.py conflict with each other
#27
karhohs
closed
6 years ago
0
exporttocellh5.py is not imported correctly
#26
karhohs
closed
6 years ago
0
MeasureRadialEntropy returns indexing error
#25
karhohs
closed
6 years ago
1
Move MedialAxis to plugins.
#24
mcquin
closed
7 years ago
0
Remove cellprofiler.modules namespace from tests
#23
mcquin
closed
7 years ago
0
Adding modules to CellProfiler-Plugins
#22
DuaaAli
closed
7 years ago
0
MeasureRadialEntropy- Report what's in the bins, not just their entropy
#21
bethac07
closed
7 years ago
0
MeasureRadialEntropy should return values, not just entropy
#20
bethac07
closed
1 year ago
1
the predict plugin does not run in gui
#19
karhohs
opened
7 years ago
5
Ilastik/predict
#18
karhohs
closed
7 years ago
3
Do we need test files for the plugins?
#17
karhohs
closed
7 years ago
2
Update gitignore to include exemptions found in the CellProfiler project
#16
karhohs
closed
7 years ago
0
Move RandomWalkerAlgorithm from CellProfiler to CellProfiler-plugins …
#15
mcquin
closed
7 years ago
0
RandomWalker algorithm
#14
mcquin
closed
7 years ago
0
Pixel classification predictions using Ilastik classifier
#13
mcquin
closed
6 years ago
15
MeasureTrackQuality
#12
DanRuderman
closed
7 years ago
12
measure image quality
#11
jhung0
closed
6 years ago
9
Provide point and click instructions for using plugins
#10
AnneCarpenter
closed
7 years ago
1
Enable Travis
#9
mcquin
closed
7 years ago
0
IdentifyYeastCells
#8
Fafa87
closed
5 years ago
21
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