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CellProfiler
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CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
http://plugins.cellprofiler.org/
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v4.0
#106
bethac07
closed
3 years ago
0
ignore empty barcodes
#105
ErinWeisbart
closed
4 years ago
1
Compensate rescale
#104
bethac07
closed
4 years ago
0
What version of cellprofiler should I be using?
#103
ctr26
closed
4 years ago
3
CompensateColors should sort channel names to make sure cycles stay in order
#102
bethac07
opened
4 years ago
0
Threshold_all
#101
bethac07
closed
4 years ago
1
Measure Radial Entropy Produces an Error
#100
NasimJ
closed
1 year ago
1
Make clipping 0-1 optional in CompensateColors
#99
bethac07
closed
3 years ago
0
Clamping Intensity Readouts in Pooled Cell Painting Spot Calling
#98
gwaybio
closed
1 year ago
2
Fix module imports for CP3
#97
DavidStirling
closed
4 years ago
4
DoGnet
#96
bethac07
closed
4 years ago
0
Fix imports, remove Identify dependency
#95
bethac07
closed
4 years ago
0
WIP Add Barcode Scores, N matched calls to CallBarcodes
#94
bethac07
closed
3 years ago
1
Save16BitPNGs doesn't save anything out
#93
bethac07
closed
1 year ago
2
RCNN model
#92
0x00b1
closed
4 years ago
0
Classifypixelsunet doesn't load. Error while import keras
#91
ssitn
closed
1 year ago
15
(linux) Plugin classifypixelsunet not able to initialize properly - import failure
#90
Scotchman0
closed
4 years ago
8
Plugins not loading into CellProfiler3.1.8
#89
KarishmaVal
closed
4 years ago
0
New version of cellprofiler is missing some modules used to be used in plugins
#88
nickorka
closed
5 years ago
1
Color compensation module
#87
bethac07
closed
5 years ago
0
Python 3 compatibility issues
#86
cclauss
closed
1 year ago
0
Travis CI: Add more flake8 tests
#85
cclauss
closed
3 years ago
0
Update barocode calling module
#84
bethac07
closed
5 years ago
0
Create save_16bit_pngs.py
#83
NiklasTR
closed
5 years ago
1
Create rescale_mode_percentile.py
#82
NiklasTR
closed
5 years ago
0
[WIP] Module for calling barcodes
#81
bethac07
closed
5 years ago
1
Create rescale_mean_sd.py
#80
NiklasTR
closed
5 years ago
3
Update documentation to clarify that some plugins need a CellProfiler version installed from source
#79
cells2numbers
closed
1 year ago
1
Include CP Charm in CellProfiler-plugins
#78
nickwhalen06
closed
5 years ago
0
Explicit tuple is required inside a comprehension in Python 3
#77
cclauss
closed
5 years ago
0
Iterative approach to new scikit-image active contour methods
#76
AetherUnbound
closed
5 years ago
0
Travis CI: Add flake8 to find syntax errors and undefined names
#75
cclauss
closed
5 years ago
0
Set the size of the background to zero
#74
AetherUnbound
closed
6 years ago
0
Fixes issues #65 and #70, further changes to more current Keras interface
#73
VolkerH
closed
5 years ago
0
License ? in particular unet
#72
VolkerH
closed
6 years ago
5
Update classifypixelsunet.
#71
VolkerH
closed
6 years ago
5
module error in unet classification - problem and fix
#70
VolkerH
closed
1 year ago
1
Active contour model unpack error
#69
ge2sasag
closed
1 year ago
2
SeedObjects - add a "max seeds per object" option.
#68
AetherUnbound
closed
6 years ago
0
Add ability to preserve labels dropped by declumping step
#67
AetherUnbound
closed
6 years ago
0
add export option for blob centers
#66
karhohs
closed
6 years ago
0
ClassifyPixels-Unet fails
#65
cells2numbers
closed
1 year ago
9
Fix ShollAnalysis plugin
#64
bethac07
closed
1 year ago
1
Spectral analysis
#63
jhung0
closed
5 years ago
2
ConstrainObjects module
#62
AetherUnbound
closed
6 years ago
0
Fix caching section for Travis CI
#61
iriberri
closed
6 years ago
1
MergeObjects - minimum contact area option
#60
AetherUnbound
closed
6 years ago
0
SeedObjects module
#59
AetherUnbound
closed
6 years ago
0
Refactor tests so a new instance of a module is given on each run
#58
AetherUnbound
closed
6 years ago
0
Add possibility to use custom UNet model in ClassifyPixels-Unet
#57
cells2numbers
closed
1 year ago
1
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