Closed bsiranosian closed 2 years ago
When loading a gctx file that was created with the traditional version of the cmapR or cmapPy package, it should load the data into the meth_mat slot, and put a matrix of NAs in the cov_mat slot.
This is important because I use the same format for processing kraken2 results with the code from https://github.com/bhattlab/kraken2_classification
Fixed in https://github.com/Cellular-Longevity/cmapR/commit/b67c40814464dac9f53f31044afcd557f6822ec8
bsiranosian
commented
2 years ago
When loading a gctx file that was created with the traditional version of the cmapR or cmapPy package, it should load the data into the meth_mat slot, and put a matrix of NAs in the cov_mat slot.
This is important because I use the same format for processing kraken2 results with the code from https://github.com/bhattlab/kraken2_classification