Cellular-Semantics / whole_mouse_brain_ontology

A data-driven cell-type ontology of the whole mouse brain.
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WARNING: This draft ontology is based on out-date analysis and so should not be used except as a reference for design patterns potentially of use in future verions.

Whole Mouse Brain Ontology

The Whole Mouse Brain Ontology project constructs a data-driven cell-type ontology of the mouse brain. This project utilizes high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain to build a comprehensive understanding of the molecular and cellular diversity within the mouse brain.

WMBO aims to construct a robust and hierarchical ontology that organizes brain cell types based on shared gene expression patterns, functional properties, and anatomical locations.

Contact

Please use this GitHub repository's Issue tracker to request new terms/classes or report errors or specific concerns related to the ontology.

Acknowledgements

This ontology repository was created using the Ontology Development Kit (ODK).