Python package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data
CS-CORE is available on GitHub. You can install it using
pip install git+https://github.com/ChangSuBiostats/CS-CORE_python.gitWe provide a vignette on running CS-CORE with AnnData object in Python in this notebook.
We also provide a demo on CS-CORE's time and memory usage in two typical scenarios in this notebook.
Chang Su at chang.su@emory.edu
Su, C., Xu, Z., Shan, X. et al. Cell-type-specific co-expression inference from single cell RNA-sequencing data. Nat Commun 14, 4846 (2023). https://doi.org/10.1038/s41467-023-40503-7