Chaste code generation from SBML

The chaste_codegen_sbml module takes SBML models as input and uses libSBML to parse the models and output C++ code for Chaste.

Installation

We recommend installing in a virtual environment e.g.

python -m venv /path/to/new/virtual/environment
source /path/to/new/virtual/environment/bin/activate

User installation:

cd /path/to/chaste_codegen_sbml
pip install .

Developer installation. This adds additional dependencies for development and testing (e.g. pytest) and makes the installation editable:

cd /path/to/chaste_codegen_sbml
pip install -e .[dev]

Usage

chaste_codegen_sbml [-h] sbml_file

Testing