Chris1221 coRge issues - Githubissues

Chris1221 / coRge

Evaluation of Simultaneous Inference Methods for the Human Genome.

http://chrisbcole.me/coRge/

Apache License 2.0

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issues

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Modular reporting of output components & Conversion to S4 classes

#43 Chris1221 opened 7 years ago
1
Integrate New Reference Panel & Look into Suspect Statistics

#42 Chris1221 opened 7 years ago
1
Integrate ODP correction

#41 Chris1221 opened 8 years ago
1
[v0.7.1.9000] Gene based analysis option

#40 Chris1221 opened 8 years ago
1
Logging with futile.logger and pass up threshold

#39 Chris1221 opened 8 years ago
0
Add in gene "mode"

#38 Chris1221 closed 8 years ago
0
[v0.6.7.9000] More detailed reporting, move thresholding to C++, and small bug fixes.

#37 Chris1221 closed 8 years ago
0
[v0.6.6.9000] Reimpliment unit tests

#36 Chris1221 closed 8 years ago
1
[v0.6.5.9000] Small issues and improve reporting.

#35 Chris1221 closed 8 years ago
0
[v0.6.4.9000] Deprecate i and j args in favour of path to file / dir

#34 Chris1221 opened 8 years ago
0
[v0.6.3.9000] Singular Matrices in c(1, gen)

#33 Chris1221 closed 8 years ago
1
Unsigned to signed int comparison [-wSign-compare]

#32 Chris1221 closed 8 years ago
1
[v0.6.3.9000] Fully rewrite assoc in c++

#31 Chris1221 closed 8 years ago
0
CentOS 6 Compatibility (g++ < 4.6)

#30 Chris1221 closed 8 years ago
1
v0.5.11.9000: Port plink/gtools/snptest functions inside R to reduce I/O

#29 Chris1221 closed 8 years ago
0
v0.5.10.9000: Small fixes and correct thread spawning

#28 Chris1221 closed 8 years ago
1
Export group and group_name arguements

#27 Chris1221 closed 8 years ago
0
v0.5.8.9000 [Prepare for analysis run, etc.]

#26 Chris1221 closed 8 years ago
0
v0.5.7.9000 [Batch compatibility, Unit tests, Better Exports]

#25 Chris1221 closed 8 years ago
3
Remedy .GlobalEnv() workaround for `samp`

#24 Chris1221 opened 8 years ago
1
Clean up namespace conflict warnings with @ImportFrom

#23 Chris1221 closed 8 years ago
2
Add `mode` argument and true positive (TP) gradient (`mode = "tp_gradient"`) mode.

#22 Chris1221 closed 8 years ago
1
Non finite elements introduced in effect size calculation

#21 Chris1221 closed 8 years ago
0
snps out of scope in coRge::phen

#20 Chris1221 closed 8 years ago
0
Circumvent need for coRge::gen2r()

#19 Chris1221 closed 8 years ago
1
Import shell scripts from inst/bash in sim.gen()

#18 Chris1221 closed 8 years ago
0
Vignette

#17 Chris1221 opened 8 years ago
0
Adjust p values by grouping vector [correct() and analyze()]

#16 Chris1221 closed 8 years ago
0
Clean up errors

#15 Chris1221 closed 8 years ago
4
Full functionality [plus unit testing]

#14 Chris1221 closed 8 years ago
1
Failed attempts at speeding up reading (i.e. things which are not faster than fread).

#13 Chris1221 closed 8 years ago
7
data.table::fread() / coR-ge::gen2r() => readlines() + foreach::dopar()

#12 Chris1221 closed 8 years ago
3
base::for => doMC::foreach [Oxford to R format conversion]

#11 Chris1221 closed 8 years ago
0
Update Unit Testing / fix packrat dependencies

#10 Chris1221 closed 8 years ago
3
Sub Script function

#9 Chris1221 closed 8 years ago
3
Vectorize SNPTEST2R.R

#8 Chris1221 closed 8 years ago
0
Auto manage data and document; CI with travis and appveyor

#7 Chris1221 closed 8 years ago
1
small things

#6 Chris1221 closed 8 years ago
0
Convert to R package format and add Travis tracking

#5 Chris1221 closed 8 years ago
0
Convert to R package format and add Travis tracking

#4 Chris1221 closed 8 years ago
0
Slim down code, unify runs to one per job

#3 Chris1221 closed 8 years ago
1
Update README.md

#2 Chris1221 closed 8 years ago
0
Issues Remaining

#1 Chris1221 closed 8 years ago
0