MethylCapsNet

Software framework for investigating DNA Methylation Capsules, currently under review, biorxiv available here: https://www.biorxiv.org/content/10.1101/2020.08.14.251306v1

Note: Our repository is currently undergoing a refactor. See https://github.com/Christensen-Lab-Dartmouth/MethylCapsNet/issues/6 for additional information.

Quick installation instructions:

conda install -c bioconda bedtools
# alternatively, wget https://github.com/arq5x/bedtools2/releases/download/v2.30.0/bedtools.static.binary && mv bedtools.static.binary [PATH TO BIN HERE]/bedtools
pip install methylnet
git clone https://github.com/Christensen-Lab-Dartmouth/MethylCapsNet
cd MethylCapsNet
git lfs pull
pip install .
install_methylcaps_dependencies

Credits for assistance with R scripts: https://github.com/SamBuckberry/RUN-WGCNA