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Barcode contamination
#29
Cleiti
closed
1 year ago
1
2. out.html
#28
Cleiti
opened
1 year ago
1
pipeline!
#27
Cleiti
opened
1 year ago
0
1. Run sarek on HORSE
#26
Cleiti
closed
1 year ago
1
Text stats from multiQC html -> into html
#25
Cleiti
opened
1 year ago
2
raw data: where. how?
#24
Cleiti
opened
1 year ago
0
1. Species_mix sarek
#23
Cleiti
closed
1 year ago
1
Demultiplex horse+sill+speciesmix
#22
Cleiti
opened
1 year ago
3
OBS: the latest version of any code is currently in bigYEAST/
#21
Cleiti
opened
1 year ago
0
2. sarek_results.py -> html
#20
Cleiti
opened
1 year ago
4
Current WORKFLOW
#19
Cleiti
opened
1 year ago
0
SAREK-CHANGELOG 2.7.1 -> 3.2.0
#18
Cleiti
closed
1 year ago
0
demux.json has 48hr+5cores instead of original 12hr+1core. Most probably doesn't even use it?
#17
Cleiti
opened
1 year ago
0
DATA_OUT: je results into same pdf
#16
Cleiti
closed
1 year ago
0
DATA_OUT: GC bias plot (picard -> all plex on one plot)
#15
Cleiti
closed
1 year ago
5
4. New demultiplexer
#14
Cleiti
closed
1 year ago
1
run sarek on bigYEAST
#13
Cleiti
closed
1 year ago
0
run je+sarek on smallYEAST + get same results as Anders
#12
Cleiti
closed
1 year ago
0
Separate prep_sarek into own script
#11
Cleiti
closed
1 year ago
0
Fully adapt to a new sarek version
#10
Cleiti
closed
1 year ago
0
3. Annotation
#9
Cleiti
opened
1 year ago
5
Interpreting variant calling results
#8
Cleiti
opened
1 year ago
0
run sarek on bigYEAST
#7
Cleiti
closed
1 year ago
0
Change DEFAULTS for input values in Input_from_commandline tasks when giving away the project.
#6
Cleiti
opened
1 year ago
1
Input_from_commandline: prep_sarek.py
#5
Cleiti
opened
1 year ago
0
Input_from_commandline: demux.sh
#4
Cleiti
opened
1 year ago
0
Input_from_commandline: demux.json
#3
Cleiti
opened
1 year ago
0
Input_from_commandline: demultiplex.py
#2
Cleiti
opened
1 year ago
0
Input_from_commandline: make_fastqlist.sh
#1
Cleiti
closed
1 year ago
0