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Clinical-Genomics-Lund / bonsai

Visualize and analyze resistance and outbreak of bacterial pathogen
https://bonsai-wgs.readthedocs.io/en/latest/
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Automatic definition of sample id #157

Closed mhkc closed 5 months ago

mhkc commented 6 months ago

This PR change so sample_id can set sample id by concatenating LIMS ID and Sequencing run if its not defined in the input file.

The PR also adds sample name, LIMS id, and sequencing run as selectable columns.