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Clinical-Genomics-Lund / bonsai

Visualize and analyze resistance and outbreak of bacterial pathogen
https://bonsai-wgs.readthedocs.io/en/latest/
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Sourmash clustering does not work with dynamic sample ids #167

Closed mhkc closed 5 months ago

mhkc commented 5 months ago

The sourmash clustering no longer works now that sample ids are dynamically assigned on upload. Previously the sample id could be inferred by the name of the fasta file used to generate the signature file which is no longer the case.