Describe the bug
Error 500 Errmsg display box pops up when viewing a variant in IGV.
To Reproduce
Steps to reproduce the behavior:
Select any sample.
Click on "Variants" in the top-left corner.
Under tbprofiler, click on "IGV" of any variant on the right side of each row.
See error
Expected behavior
No error pops up.
Screenshots
Desktop (please complete the following information):
OS: Windows
Browser: chrome
Version: Doesn't matter
Additional context
The following command was run:
docker logs <docker_container_id> --tail 40
Output from Bonsai api logs:
File "/home/worker/app/bonsai_api/io.py", line 60, in is_file_readable
raise FileNotFoundError(file_path)
FileNotFoundError: /access/jasen/mtuberculosis/vcf/<limsid_seqrun>_annotated_delly.vcf
mhkc
commented
3 months ago
Describe the bug Error 500 Errmsg display box pops up when viewing a variant in IGV.
To Reproduce Steps to reproduce the behavior:
Expected behavior No error pops up.
Screenshots
Desktop (please complete the following information):
Additional context The following command was run:
Output from Bonsai api logs: