Can configure SSL verification and usage of SSL certs for API requests from frontend.
Added cards ShigaPass result and function to tag Ecoli and Shigella spp with ShigaPass result.
Added option to filter variants on WHO class and variant type in the variants view.
Added button to reset variants filter on the variants view.
Added support for more IGV annoation file formats.
Changed
Bonsai now uses sample ids created by Jasen to identify unique samples.
Updated PRP to version 0.9.3
Improved installation instructions.
Updated requests to version 2.32.0
Added startup commands to minhash and allele clustering services Dockerfiles.
Use pydantic-settings for config management in frontend.
Updated the samples tables to make sample name, sample id, and major spp searchable.
Truncate long tbprofiler variant names and show full name on hover.
Fixed issue that could prevent IGV from loading.
Updated IGVjs to version 3.0.2
Updaed how AMR variants are displayed on the sample view page. All varians are displayed if no variant have been processed, otherwise only show passed resistance yielding variants.
Fixed
Fixed misalignment of the checkbox in the samples table in the group and groups view.
Fixed bug in the TB lineage card that could crash the frontend
This PR releases version 0.7.0 of Bonsai.
Added
Changed
Fixed