Clinical-Genomics-Lund / nextflow_wgs

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Bam entry point does not run DNAScope if ID != group #137

Closed Jakob37 closed 3 weeks ago

Jakob37 commented 7 months ago

When running the pipeline with bam files as starting point, they do not run through unless the ID and group names are identical.

This seems to be due to a mixup in the order of ID / group input channels. This becomes a problem as they are joined together with the BQSR channel.