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Clinical-Genomics-Lund / nextflow_wgs

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Add version to genmod container name + move out of main.nf #146

Open alkc opened 7 months ago

alkc commented 7 months ago

https://github.com/Clinical-Genomics-Lund/nextflow_wgs/blob/0c9ab0ec616d5f72e3c42d551e7aef516272a6ee/main.nf#L2101

https://github.com/Clinical-Genomics-Lund/nextflow_wgs/blob/0c9ab0ec616d5f72e3c42d551e7aef516272a6ee/main.nf#L2149

https://github.com/Clinical-Genomics-Lund/nextflow_wgs/blob/0c9ab0ec616d5f72e3c42d551e7aef516272a6ee/main.nf#L2188

https://github.com/Clinical-Genomics-Lund/nextflow_wgs/blob/0c9ab0ec616d5f72e3c42d551e7aef516272a6ee/main.nf#L3572

  1. Rename the container to include the genmod version (link genmod.sif to renamed container in case other pipelines depend on it? make a copy? dunno)
  2. Move container path to config
alkc commented 7 months ago

An opportunity to update genmod as well, if relevant