Not sure yet that this is a bug on our end, but let's open the issue here in case it is.
Loading any wgs case into scout (v4.75) can yield a warning similar to this one:
2024-02-07 11:48:13 4ff80fcee854 scout.build.variant.clnsig[177] WARNING Clinsig value uncertain_risk_allele|risk_factor does not have an internal representation
The clinsig values can vary, but they are always multiple annotations split by a pipe.
Not sure yet that this is a bug on our end, but let's open the issue here in case it is.
Loading any wgs case into scout (v4.75) can yield a warning similar to this one:
The clinsig values can vary, but they are always multiple annotations split by a pipe.
The warning is triggered here: https://github.com/Clinical-Genomics/scout/blob/78214fa0d168c577793c0e86eee530d71472f8c3/scout/build/variant/clnsig.py#L18
The allowed values are here and only allow single annotations: https://github.com/Clinical-Genomics/scout/blob/78214fa0d168c577793c0e86eee530d71472f8c3/scout/constants/clnsig.py#L19
Next up is to check why the values sometimes reach that point unsplit.