Clinical-Genomics-Lund / nextflow_wgs

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`GQC` encoded as `float` disables `GATK` caller penalty #170

Closed alkc closed 6 months ago

alkc commented 6 months ago

The rank model specifies the GATK-only info field value GQC as an integer, but the value sometimes occurs as a float in which case it won't be processed correctly be genmod.

Noticed when two runs had different caller penalty scores for the same variants.