search

Clinical-Genomics-Lund / nextflow_wgs

5 stars 5 forks source link

Load MT frequencies into loqusdb #173

Closed Jakob37 closed 3 months ago

Jakob37 commented 5 months ago

We both need to load MT variants into LoqusDB as part of the SNV load. The issue is that the MT caller does not output quality fields compatible with what is expected by LoqusDB.

A primitive solution would be to add quality values directly to all MT variants with a predefined value.

A more sophisticated solution would be to translate existing scores into the expected score format.

We would also need to load previous variants into the production db (@ViktorHy has means to do this).

Jakob37 commented 3 months ago

Could this one be said to be completed @ViktorHy ?

ViktorHy commented 3 months ago

yes, closing