Gnomad v4

[Jakob37]

Description

What is changed? What is the result of the changes?

fixes # (issue)

Type of change

• [ ] Major change
• [ ] Minor change
• [ ] Patch
• [ ] Documentation

Checklist:

• [ ] My code follows the style guidelines for NF pipelines at CMD
• [ ] I have performed a self-review of my code
• [ ] I have commented my code, particularly in hard-to-understand areas
• [ ] My changes generate no new warnings (Keep an eye on .nextflow.log !)
• [ ] I have updated the CHANGELOG
• [ ] The latest commit in the master branch is tagged with the correct version number

Major change

• [ ] Stub run completes without errors or new warnings
• [ ] onco run finishes without any new warnings/errors and the results can be loaded into scout
• [ ] wgs single run finishes without any new warnings/errors and the results can be loaded into scout
• [ ] wgs trio run finishes without any new warnings/errors and the results can be loaded into scout
• [ ] At least one other person has reviewed and approved my code
• [ ] I have made corresponding changes to the documentation

Minor change

• [ ] Stub run completes without errors or new warnings
• [ ] onco run finishes without any new warnings/errors and the results can be loaded into scout
• [ ] wgs single run finishes without any new warnings/errors and the results can be loaded into scout
• [ ] wgs trio run finishes without any new warnings/errors and the results can be loaded into scout
• [ ] At least one other person has reviewed and approved my code
• [ ] I have made corresponding changes to the documentation

Patch

• [ ] Stub run completes without errors or new warnings

  [Optional] Are there any post-deployment tasks we need to perform?

  • [ ] Task/link to issue 1
  • [ ] Task/link to issue 2
  • [ ] ...

  Instructions for the reviewers

  How to test the changes

  1. Step 1
  2. Step 2

  Expected outcome

  [Optional] Additional information

  Review

  Review performed by:

  • Reviewer 1: Name1, (\@Github_handle1)
  • Reviewer 2: Name1, (\@Github_handle2)
  • ...

  Testing performed by:

  • Name, (\@Github_handle)
  • ...

  Post-merge

  • [ ] The master branch has been tagged with the new version number.