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Clinical-Genomics-Lund / nextflow_wgs

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For onco, `default_gene_panels` are not included in `gene_panels` in the yaml output #185

Open Jakob37 opened 5 months ago

Jakob37 commented 5 months ago

In the yaml file I worked with, it looked like this:

gene_panels: []
default_gene_panels: ["arftlig-brostcancer"]

This meant that the "arftlig-brostcancer" panel didn't show up in Scout.

After adding it also to the gene_panels array it showed up.

For wgs, a panel in default_gene_panels that I checked was also present in gene_panels.