Clinical-Genomics-Lund / nextflow_wgs

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Memory usage markdup and dnascope #200

Open ViktorHy opened 3 months ago

ViktorHy commented 3 months ago

Samples with higher than expected AT-dropouts and GC-dropout tends to eat a lot more memory. We need to increase maximum mem allocation for these processes.

Also, manta and expansionhunter will be affected by these increased dropouts resulting in much longer run times