Closed Jakob37 closed 3 months ago
I'll copy this from the old PR
Ready for review @ViktorHy
I have stub-run it in the master branch and here for all profiles, and checked that the executed processes are exactly the same.
Would like to discuss the part of the code around freebayes and the subsequent split_normalize at some point. But that is more for my understanding.
Removing the sensitive data is a different story. That will require some thought prior to merge.
Thanks for the review! The tests went through fine. Let's discuss the institute details when we get the chance and wrap things up.
Description and reviewer info
What is changed? How does this update improve the pipeline? (For reviewers) How to test it?
Close #162
Clean copy of the PR #82
Type of change
Checklist
Verification_samples_log
Excel sheetDocumentation
Patch
Major / Minor change
onco
run finishes without any new warnings/errors and the results can be loaded into scoutwgs
single run finishes without any new warnings/errors and the results can be loaded into scoutwgs
trio run finishes without any new warnings/errors and the results can be loaded into scoutTest/review documentation
Review performed by
(Add if missing)
Testing performed by