This update restores the GERP convservation score from dbNSFP/VEP
Fixes #205
Might have to wait until #191 is merged.
This update does not restore GERP to the rank models, might be a better idea to do it as a part of #191 or as a minor patch after #191 has been merged into master.
Type of change
[ ] Documentation
[ ] Patch
[ ] Minor change
[ ] Major change
Checklist
[ ] Self-review of my code
[ ] Update the CHANGELOG
[ ] Tag the latest commit (vX.Y.Z format)
[ ] Log samples used for testing in the Verification_samples_log Excel sheet
[x] GERP_RS scores added in CSQ fields for SNVs/indels
[x] GERP score extracted into INFO-field by modify_scout_vcf.pl
Documentation
[ ] At least one other person has reviewed my changes (not required for trivial changes)
Patch
[ ] Stub run completes without errors or new warnings
[ ] At least one other person has reviewed and approved my code (not required for trivial changes)
Major / Minor change
[ ] Stub run completes without errors or new warnings
[ ] onco run finishes without any new warnings/errors and the results can
be loaded into scout
[ ] wgs single run finishes without any new warnings/errors and the results
can be loaded into scout
[ ] wgs trio run finishes without any new warnings/errors and the results
can be loaded into scout
[ ] At least one other person has reviewed and approved my code
[ ] I have made corresponding changes to the documentation (software versions, etc.)
Description and reviewer info
This update restores the GERP convservation score from dbNSFP/VEP
Fixes #205
Might have to wait until #191 is merged.
This update does not restore GERP to the rank models, might be a better idea to do it as a part of #191 or as a minor patch after #191 has been merged into master.
Type of change
Checklist
Verification_samples_log
Excel sheetDocumentation
Patch
Major / Minor change
onco
run finishes without any new warnings/errors and the results can be loaded into scoutwgs
single run finishes without any new warnings/errors and the results can be loaded into scoutwgs
trio run finishes without any new warnings/errors and the results can be loaded into scoutTest/review documentation
Review performed by
(Add if missing)
Testing performed by