Open alkc opened 1 month ago
This update adds a flag --alignment_only to instruct the pipeline to only output BAMs and QC data.
--alignment_only
Will be used to regenerate BAM files for /access/wgs/bam and whambam.
/access/wgs/bam
Verification_samples_log
onco
wgs
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Put on hold while I deal with the reruns, but what I'd like to do next is to test run this a final time after merging master into this branch, then it should be ready to merge and deploy
Description and reviewer info
This update adds a flag
--alignment_only
to instruct the pipeline to only output BAMs and QC data.Will be used to regenerate BAM files for
/access/wgs/bam
and whambam.Type of change
Checklist
Verification_samples_log
Excel sheetSpecific tests
Major / Minor change
onco
run finishes without any new warnings/errors and the results can be loaded into scoutwgs
single run finishes without any new warnings/errors and the results can be loaded into scoutwgs
trio run finishes without any new warnings/errors and the results can be loaded into scoutTest/review documentation
Review performed by
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Testing performed by