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Clinical-Genomics
/
preClinVar
A ClinVar API submission helper written in FastAPI
MIT License
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PytestDeprecationWarning : The hookimpl CovPlugin.pytest_configure_node uses old-style configuration options
#134
northwestwitch
opened
2 weeks ago
0
[deprecatiob] on_event is deprecated, use lifespan event handlers instead.
#133
northwestwitch
opened
2 weeks ago
0
Python EOL (October 2024)
#132
northwestwitch
opened
2 weeks ago
0
Update submission schema to the latest
#131
northwestwitch
closed
2 weeks ago
1
Update issue templates
#130
northwestwitch
closed
2 weeks ago
1
Updated setuptools to v.71 to fix a security issue
#129
northwestwitch
closed
2 months ago
2
Address security issue in setuptools < 70.0
#128
northwestwitch
closed
2 months ago
0
Add an endpoint proxy to the submissions status of ClinVar
#127
northwestwitch
closed
5 months ago
1
Rename /validate to /apitest
#126
northwestwitch
closed
5 months ago
0
Create a new /status endpoint
#125
northwestwitch
closed
5 months ago
0
Rename /validate to /apitest
#124
northwestwitch
closed
5 months ago
0
Revert Validate and add another endpoint to check the validation errors of a demo submission
#123
northwestwitch
closed
5 months ago
2
Prepare version 2.6
#122
northwestwitch
closed
5 months ago
1
Expand validate output to display link for downloading json with submission errors
#121
northwestwitch
closed
5 months ago
2
Change validate endpoint to show detailed submission errors
#120
northwestwitch
closed
5 months ago
0
Patch version 2.5.2
#118
northwestwitch
closed
5 months ago
2
Fix GitHub action to use Codecov token
#117
northwestwitch
closed
5 months ago
0
Error uploading stats to Codecov
#116
northwestwitch
closed
5 months ago
0
Fix multiple conditions parsing
#115
northwestwitch
closed
5 months ago
8
ClinVar upload issues..
#114
dnil
closed
5 months ago
7
New update of the API schema
#113
northwestwitch
closed
1 week ago
1
Patch 2.5.1
#112
northwestwitch
closed
6 months ago
3
Latest release doesn't deploy on stage or prod
#111
northwestwitch
closed
6 months ago
2
Minor release 2.5
#110
northwestwitch
closed
6 months ago
0
Update fastapi to avoid security vulnerability
#109
northwestwitch
closed
6 months ago
0
Update API submission schema with latest schema from ClinVar
#108
northwestwitch
closed
6 months ago
1
New API schema with important changes
#107
northwestwitch
closed
6 months ago
2
Security vulnerability in FastAPI
#106
northwestwitch
closed
6 months ago
0
Minor release 2.4
#105
northwestwitch
closed
7 months ago
2
Bump fastapi from 0.78.0 to 0.109.1
#104
dependabot[bot]
closed
6 months ago
1
Bump python-multipart from 0.0.5 to 0.0.7
#103
dependabot[bot]
closed
7 months ago
1
Accept new column names for clinsig: Germline classification and Comment on classification
#102
northwestwitch
closed
7 months ago
1
Allow new key names for clinical significance fields
#101
northwestwitch
closed
7 months ago
1
Redefinition of somatic variants in ClinVar breaks tests
#100
northwestwitch
closed
5 months ago
1
Replace deprecated pkg_resources with importlib_resources
#99
northwestwitch
closed
8 months ago
1
pkg_resources deprecation
#98
northwestwitch
closed
8 months ago
0
Update API validation schema
#97
northwestwitch
closed
8 months ago
1
Parse conditionSet.MultipleConditionExplanation value
#96
northwestwitch
closed
6 months ago
3
Fix installing app using python 3.8
#95
northwestwitch
closed
8 months ago
0
cannot import name 'deprecated' from 'typing_extensions'
#94
northwestwitch
closed
8 months ago
1
Parse and assign values to multipleConditionExplanation field
#93
northwestwitch
closed
6 months ago
0
Fix description of response returned by dry run in README file
#92
northwestwitch
closed
9 months ago
1
Update version of external images in GitHub actions
#91
northwestwitch
closed
10 months ago
1
Bump certifi 4 security
#90
northwestwitch
closed
1 year ago
1
Deprecated save-state message when running Docker actions
#89
northwestwitch
opened
1 year ago
0
Bump certifi from 2022.6.15 to 2023.7.22
#88
dependabot[bot]
closed
1 year ago
1
ClinVar submission changes and docs on GitHub
#87
northwestwitch
opened
1 year ago
1
Wrong info on README
#86
northwestwitch
closed
9 months ago
0
Create deployment instructions
#85
northwestwitch
opened
1 year ago
0
Create patch version 2.3.1
#84
northwestwitch
closed
1 year ago
2
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