Clinical-Genomics trailblazer issues

Clinical-Genomics / trailblazer

Keep track of and manage analyses

MIT License

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issues

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Get sample ids for selected cases in trailblazer view

#504 ChrOertlin opened 6 days ago
1
Confusing Statuses for Pipelines that Uses NF Tower

#503 RasmusBurge-CG opened 2 weeks ago
4
Hidden analyses not found when uploading to scout

#502 diitaz93 opened 2 weeks ago
3
feat(update): Werkzeug

#501 henrikstranneheim closed 2 weeks ago
2
Make sample IDs searchable in the Analysis view

#500 Karl-Svard opened 4 weeks ago
1
Bump werkzeug from 3.0.4 to 3.0.6

#499 dependabot[bot] closed 2 weeks ago
2
Python syntaxwarning

#498 henrikstranneheim closed 1 month ago
1
fix(pydantic): Warning

#497 henrikstranneheim closed 1 month ago
3
Pydantic: UserWarning: A custom validator is returning a value other than `self`.

#496 henrikstranneheim closed 1 month ago
1
feat(update) Python

#495 henrikstranneheim closed 1 month ago
4
Rm conda env and use container

#494 henrikstranneheim closed 1 month ago
10
fix PyPi build action

#493 henrikstranneheim closed 2 months ago
1
Rename workflow fastq for raw data

#492 diitaz93 closed 2 months ago
2
Use poetry

#491 henrikstranneheim closed 2 months ago
3
Add is_hidden parameter

#490 islean closed 2 months ago
2
Remove tower workflow file interactions

#489 seallard closed 2 months ago
3
Remove unused code

#488 seallard closed 2 months ago
1
Fix missing cancellable field

#487 seallard closed 3 months ago
1
Move cancellable logic to BE

#486 seallard closed 3 months ago
1
Cancel tower analysis with stored workflow id

#485 seallard closed 2 months ago
2
Accept tower workflow id when adding a pending analysis

#484 seallard closed 3 months ago
1
Add tower workflow id to analysis

#483 seallard closed 3 months ago
1
Fix tower status update

#482 seallard closed 3 months ago
1
Add tower service error handler

#481 seallard closed 2 months ago
1
Extract slurm client error handling

#480 seallard closed 3 months ago
1
Add analysis in cancel response

#479 seallard closed 3 months ago
1
Patch tower analysis status update

#478 seallard closed 3 months ago
1
Fix cancel response

#477 seallard closed 3 months ago
1
Add cancel endpoint

#475 seallard closed 3 months ago
1
Add endpoint error handling

#474 seallard closed 3 months ago
1
Add order id to analysis response

#473 seallard closed 3 months ago
1
Store tower analysis url

#472 fevac opened 3 months ago
4
Remove job step formatting logic

#471 seallard closed 3 months ago
2
feat(update): Linters

#470 henrikstranneheim closed 3 months ago
2
Filter on workflow for upload status logic

#469 seallard closed 3 months ago
1
Upload date set for analyses even when RSYNC job fails

#468 seallard opened 4 months ago
2
Set upload date for FASTQ analysis

#467 seallard closed 3 months ago
2
Add query param for hidden analyses

#466 seallard closed 4 months ago
1
Use abbreviation

#465 seallard closed 4 months ago
2
Require user abbreviation

#464 seallard closed 4 months ago
3
Clean up tower and slurm interactions

#463 seallard closed 3 months ago
2
Add user signatures

#462 seallard closed 4 months ago
3
Move tower client

#461 seallard closed 4 months ago
1
Remove unused Slurm logic in database layer

#458 seallard closed 2 months ago
1
Add user abbreviations to the database

#457 islean closed 4 months ago
4
Error when delivery message is for fastq/analysis

#456 peterpru closed 4 months ago
2
One Case Per Sample for FASTQ

#455 RasmusBurge-CG opened 5 months ago
6
Include case_ids per status in Status summary

#454 islean closed 5 months ago
2
Patch(SLURM) Change trailblazer status interaction

#453 Vince-janv closed 4 months ago
1
Confusing flags for delivered cases

#452 ChrOertlin closed 5 months ago
2