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CoBrALab
/
qbatch
The Unlicense
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Enable tagged line buffer for continuous logging
#123
gdevenyi
closed
8 years ago
1
Add --version
#122
pipitone
closed
8 years ago
3
Refactor into a module for testing and import into other projects
#121
pipitone
closed
6 years ago
7
afterany dependency support
#120
pipitone
opened
8 years ago
3
PBS holds jobs which depend on already completed jobs?
#119
pipitone
closed
8 years ago
3
--depend fails on Python 2.6 because subprocess.check_output doesn't exist
#118
pipitone
closed
8 years ago
3
Prep for 1.1 release?
#117
gdevenyi
closed
6 years ago
1
Use Amazon AWS to test LSF
#116
gdevenyi
opened
8 years ago
0
Return two empty strings if qstat is blank
#115
gdevenyi
closed
8 years ago
0
Investigate mock for better unit tests
#114
gdevenyi
opened
8 years ago
2
Add long option for verbose
#113
gdevenyi
closed
8 years ago
0
Cleanup dependencies implementation, allow dependencies on JobID explicitly
#112
gdevenyi
closed
8 years ago
2
Expose shell as an option and ENV var
#111
gdevenyi
closed
8 years ago
4
Implement batch vs saved environment processing
#110
gdevenyi
closed
8 years ago
0
Add option to provide footer at end of jobs
#109
gdevenyi
closed
8 years ago
0
Explicitly handle chunksize of 1 without parallel
#108
gdevenyi
closed
8 years ago
0
Improve dry run docs
#107
gdevenyi
closed
8 years ago
0
Enable QBATCH_QUEUE and command-line queue definition
#106
gdevenyi
closed
8 years ago
0
Should qbatch ignore commented lines in joblist file?
#105
gdevenyi
closed
8 years ago
1
--footer option to declare statements to run after commands
#104
pipitone
closed
8 years ago
1
--block option to block until jobs have finished
#103
pipitone
closed
3 years ago
10
--no-env causes failure if gnu parallel is loaded from a module
#102
pipitone
closed
8 years ago
4
Verbose flag needed for single command chattiness
#101
pipitone
closed
8 years ago
0
--advanced-help option to show help for advanced options, but hide it otherwise
#100
pipitone
closed
8 years ago
2
Add option to specify queue
#99
pipitone
closed
8 years ago
2
Fully describe -n option
#98
andrewjanke
closed
8 years ago
5
Check or cleanup job names
#97
pipitone
closed
8 years ago
2
Re-implement command-line parameters and environment variables as ConfigArgParse interface
#96
gdevenyi
opened
8 years ago
9
Allow explicit job number dependencies
#95
gdevenyi
closed
8 years ago
8
Investigate heuristics of job re-running
#94
gdevenyi
closed
8 years ago
3
Implement --header-file and --footer-file
#93
gdevenyi
closed
5 years ago
4
Fix single chunksize == 1 job wrapping
#92
gdevenyi
closed
8 years ago
6
Issue: Handling killing properly with parallel's stdout buffering
#91
gdevenyi
closed
8 years ago
8
Simplified qbatch usage
#90
pipitone
closed
8 years ago
7
Update README to document all features.
#89
gdevenyi
closed
6 years ago
0
Add THREADS_PER_COMMMAND
#88
gdevenyi
closed
8 years ago
2
Feature idea: allow batch system to manage environment
#87
gdevenyi
closed
8 years ago
4
Check for output from qstat before parsing XML
#86
gdevenyi
closed
8 years ago
0
Alternate implementation of default arguments: document in description and set post-argparse
#85
gdevenyi
opened
8 years ago
4
Change .scripts/ to .qbatch_scripts/ or .qbatch/
#84
pipitone
closed
8 years ago
1
chunk_size and cores default to ppj
#83
pipitone
closed
8 years ago
4
qstat xml parsing can't handle empty joblist
#82
gdevenyi
closed
8 years ago
4
Implement detection of array and regular dependencies for Torque/PBS
#81
gdevenyi
closed
8 years ago
12
Initial environment variable for batch options, simply appends to existing list
#80
gdevenyi
closed
8 years ago
6
Default chunk_size and cores to ppj
#79
pipitone
opened
8 years ago
6
1.0 annoucement
#78
gdevenyi
closed
8 years ago
9
Add qbatch to conda
#77
pipitone
opened
8 years ago
4
Print out settings when run
#76
pipitone
closed
8 years ago
8
Update documentation to reflect latest version
#75
gdevenyi
closed
8 years ago
1
Implement "batch system options" environment variable
#74
gdevenyi
closed
7 years ago
4
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