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CoBrALab
/
qbatch
The Unlicense
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Embed threads per command in local runjob
#173
gdevenyi
closed
6 years ago
0
Update slurm job dependency searching
#172
gdevenyi
closed
5 years ago
0
Futurize python
#171
gdevenyi
closed
6 years ago
0
Fix encoding of regex pattern.
#170
gdevenyi
closed
6 years ago
0
Force uniform handling of strings to by python3-like
#169
gdevenyi
closed
6 years ago
1
Figure out "live" testing
#168
gdevenyi
opened
6 years ago
2
Fix error checking, reformat errors
#167
gdevenyi
closed
6 years ago
0
Fix broken indentation from moving template string blocks into function
#166
gdevenyi
closed
6 years ago
1
Need option for unlimited chunk size
#165
gdevenyi
closed
3 years ago
1
Add single command support
#164
gdevenyi
closed
6 years ago
0
What should the pythonic interface return?
#163
gdevenyi
opened
6 years ago
0
Need check for gnu-parallel vs moreutils parallel
#162
gdevenyi
opened
6 years ago
1
Fork of Minimum Effort Python API
#161
gdevenyi
closed
6 years ago
0
Fix working directory spec for slurm
#160
gdevenyi
closed
6 years ago
0
Make sure all command-line parameters have short and long versions
#159
gdevenyi
closed
6 years ago
1
Minimum Effort Python API
#158
gkiar
closed
6 years ago
4
Add single command method using --
#157
gdevenyi
closed
6 years ago
2
Add --parsable option
#156
gdevenyi
opened
6 years ago
5
Implement gnu parallel joblog functionality
#155
gdevenyi
opened
6 years ago
0
Implement --min-chunksize
#154
gdevenyi
opened
6 years ago
2
Ask parallel to compress logfiles during run
#153
gdevenyi
closed
6 years ago
0
Need alternative way to specify no memory request
#152
gdevenyi
opened
6 years ago
1
Properly capture return code on local run
#151
gdevenyi
closed
6 years ago
0
Slurm cleanup
#150
gdevenyi
closed
6 years ago
11
local run mode doesn't catch errors
#149
gdevenyi
closed
6 years ago
1
warning message about missing sbatch - using qbatch 1.0.1
#148
mcvaneede
closed
6 years ago
3
Add jobid to slurm outfile specification
#147
gdevenyi
closed
6 years ago
1
logfiles without hand-made job names simply overwrite previous logs
#146
bcdarwin
closed
6 years ago
3
Add transformation of memory input parameters
#145
gdevenyi
opened
6 years ago
12
Command cross reference
#144
gdevenyi
closed
6 years ago
0
commands submitted to SGE/PBS also get executed locally
#143
bcdarwin
closed
7 years ago
1
fix PBS system detection
#142
bcdarwin
closed
7 years ago
2
Documentation: There are limits to the "array job magics"
#141
gdevenyi
opened
7 years ago
0
first attempt at making qbatch compatible with SLURM
#140
dcoynel
closed
7 years ago
12
Add TMPDIR and TMP to environment filters
#139
gdevenyi
closed
6 years ago
1
Avoid issues with redefinition of ppj on SGE systems
#138
gdevenyi
closed
7 years ago
0
compute_threads with ppj > 1 and SGE breaks due to string
#137
gdevenyi
closed
6 years ago
4
Add environment variable for QBATCH_OPTIONS
#136
gdevenyi
closed
7 years ago
1
Detect batch system with environment variables
#135
gdevenyi
closed
7 years ago
0
Update parallel to fix odd race condition in testing
#134
gdevenyi
closed
7 years ago
1
Detect/check queuing system
#133
pipitone
closed
7 years ago
3
Adds --version argument (#122)
#132
pipitone
closed
7 years ago
0
Convert test equality to sets to allow out-of-order execution
#131
gdevenyi
closed
7 years ago
17
Allow argparse to generate default usage and use it
#130
gdevenyi
closed
8 years ago
1
Fix string formatting for warning
#129
gdevenyi
closed
8 years ago
1
Export THREADS so that its usable in subcommands
#128
gdevenyi
closed
8 years ago
1
QBATCH job variables probably need to be "exported"
#127
gdevenyi
closed
8 years ago
0
Generalize scinet highmem to a pbs nodes spec line
#126
gdevenyi
closed
8 years ago
0
Add bash check for parallel
#125
gdevenyi
closed
8 years ago
0
Add support for 64GB scinet nodes
#124
gdevenyi
closed
8 years ago
4
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