CoVPN/USG Correlates Analysis Reporting Archive

Note: As of 16 October 2021, this repository has been archived. Generalized versions of its data processing and analysis modules have been split in two and migrated to a correlates data processing workflow and a correlates of risk and protection analysis workflow. This archive serves as a reference of the workflows used in developing reports for the immune correlates analyses of the Moderna and Janssen (ENSEMBLE) COVID-19 vaccine efficacy trials.

The Statistical Analysis Plan is available

• on Figshare
• on Overleaf

Collaboration Guide

Please consult this blog post, which outlines most aspects of our project organization recommendations.

• Code style guide, with some modifications; this will largely be enforcd with styler.
• Project organization: mostly independent subdirectories, each incorporating here for path resolution.
• Package version control and virtual environments using renv.
• Code review procedure: see our contribution guidelines.

Citation

When citing the analysis workflow or analytic results produced by its use, please use the following BibTeX entry or equivalent:

    @software{gilbert2021usgcove,
      author = {Gilbert, Peter B and Fong, Youyi and Benkeser, David and
        Hejazi, Nima S and Hughes, Ellis and Borate, Bhavesh and Yu,
        Chenchen and Lu, Yiwen and Li, Kendrick Q and {van der Laan}, Lars
        WP and Simpkins, Brian},
      title = {{COVID-19 Prevention Network Immune Correlates Analyses},
      year  = {2021},
      doi = {10.5281/zenodo.5593129},
      url = {https://github.com/CoVPN/correlates_reporting_usgcove_archive}
    }

License

The contents of this repository are distributed under the GPL-3 license. See file LICENSE.md for details.