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correlates_reporting_usgcove_archive
Reproducible reporting workflows for the immune correlates statistical analyses of the Moderna and Janssen COVID-19 vaccine efficacy trials by the USG/COVE Response Biostatistics Team [Archived 16 October 2021]
GNU General Public License v3.0
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update Rmd debug messages; modify index_cor so that cor_tabular is always chapter 1
#572
youyifong
closed
3 years ago
4
bug fix in cor_nonlinear: duplicate section labels may cause bookdown to error
#571
youyifong
closed
3 years ago
0
resolved conflict between OpenMPController and RhpcBLASctl
#570
brborate
closed
3 years ago
0
More generalization work
#569
youyifong
closed
3 years ago
0
Added riskscorecohortFLAG to COVE analysis
#568
brborate
closed
3 years ago
0
add parallelization disabling to _common.R
#567
youyifong
closed
3 years ago
0
Changing to Future in Run_Threshold_analysis.R
#566
Larsvanderlaan
closed
3 years ago
2
Fixed syntax error
#565
brianSimpkins
closed
3 years ago
1
fast analysis options for THRESHOLD
#564
Larsvanderlaan
closed
3 years ago
0
Check for IC50 and IC80 assays before including their figures
#563
brianSimpkins
closed
3 years ago
0
make bootstrap replicates config; add test_before_submit
#562
youyifong
closed
3 years ago
0
A single project root directory
#561
benkeser
opened
3 years ago
0
mutate columns only if they exist
#560
brborate
closed
3 years ago
0
Update CoR_wrcdf_with_VE_lines.R
#559
youyifong
closed
3 years ago
0
OSS design memo
#558
nhejazi
closed
3 years ago
0
Ensemble risk score report: updated with new tables to show input variables dropped from analysis
#557
brborate
closed
3 years ago
0
update cor_graphical report.rmd to remove pseudoneut figures if don't exist
#556
yiwenlu
closed
3 years ago
0
add printouts to beginning of report.rmd to show progress and aid debugging
#555
youyifong
closed
3 years ago
2
Cor report Table 3 title update
#554
cyu-hvtn
closed
3 years ago
1
Removing missing plots from report rmd
#553
brianSimpkins
closed
3 years ago
0
tertile markers
#552
benkeser
closed
3 years ago
3
Update clean_data.R
#551
Larsvanderlaan
closed
3 years ago
3
Update params.R
#550
Larsvanderlaan
closed
3 years ago
0
bug fix cor_threshold
#549
Larsvanderlaan
closed
3 years ago
0
Adjusting paths to cor_coxph data
#548
brianSimpkins
closed
3 years ago
0
Hopefully fixing ENSEMBLE-related cor_graphical errors
#547
brianSimpkins
closed
3 years ago
0
Removing some COVE-specific subsetting
#546
brianSimpkins
closed
3 years ago
0
new tables, new config entries, new output file location
#545
youyifong
closed
3 years ago
7
Update CoR_wrcdf_with_VE_lines.R
#544
youyifong
closed
3 years ago
0
Update CoR_wrcdf_with_VE_lines.R
#543
youyifong
closed
3 years ago
0
still trying to get it to build on travis
#542
youyifong
closed
3 years ago
1
still trying to get it to work on Travis
#541
youyifong
closed
3 years ago
1
update cor_graphical and cor_nonlinear due to changing output location in cor_coxph
#540
youyifong
closed
3 years ago
0
Working PR for principal stratification PR
#539
benkeser
opened
3 years ago
5
Update Makefile
#538
youyifong
closed
3 years ago
0
bug fix and adding sensitivity D29 analyses
#537
youyifong
closed
3 years ago
0
add ml pipeline to build instructions
#536
benkeser
closed
3 years ago
0
Update build instructions
#535
benkeser
closed
3 years ago
0
fix bug for violin/lineplots
#534
yiwenlu
closed
3 years ago
0
Risk score: updated renv.lock file to include tidymodels and associated packages
#533
brborate
closed
3 years ago
0
add severe violin figures
#532
yiwenlu
closed
3 years ago
0
Add table of cID50 deciles to cor_coxph
#531
youyifong
closed
3 years ago
2
Ensemble cor report
#530
brborate
closed
3 years ago
0
cop/cor report for 1 day post day 29 and 7 days post day 29
#529
benkeser
opened
3 years ago
0
severe plots for ENSEMBLE
#528
benkeser
opened
3 years ago
2
Riskscore janssen
#527
brborate
closed
3 years ago
0
Added new practice data
#526
brborate
closed
3 years ago
0
Major changes to cor_threshold
#525
Larsvanderlaan
closed
3 years ago
1
Riskscore janssen
#524
brborate
closed
3 years ago
0
Update cor_coxph.R
#523
youyifong
closed
3 years ago
0
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