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CompSynBioLab-KoreaUniv
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FunGAP
FunGAP: fungal Genome Annotation Pipeline
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Test run fails at Braker step: SRR1198667/braker.gff3': No such file or directory
#100
NishatTamana51
closed
9 months ago
3
Error building docker image
#99
Debatosh
closed
10 months ago
8
set paths to AUGUSTUS exectubales from its own environment variables
#98
lexming
opened
1 year ago
0
use specific installation path for SNAP executables
#97
lexming
opened
1 year ago
0
Environment issues
#96
cfz1998
closed
1 year ago
3
mpirun
#95
cfz1998
closed
1 year ago
3
FunGAP stopped
#94
cfz1998
closed
1 year ago
3
./fungap.py returned non-zero exit status 1.
#93
LiZhihua1982
closed
1 year ago
3
installation error
#92
amoltej
closed
1 year ago
5
problem with the example BUSCO dataset
#91
krostifangers
closed
1 year ago
8
Issue with wrapper_create_markdown
#90
ehsansari1234
closed
1 year ago
3
Is it possible to generate alternative splicing transcripts in final annotation
#89
chongjing
closed
2 years ago
2
RepeatModeler issue
#88
shaobinzhong
closed
1 year ago
10
input question
#87
zhaochi123
opened
2 years ago
3
download_sister_orgs.py
#86
LiZhihua1982
closed
2 years ago
4
Transcriptome
#85
giriarteS
closed
2 years ago
3
Issue while running Marker
#84
sommeslag
closed
2 years ago
5
updating singularity image to 1.1.1, removing patch_braker.pl, and fi…
#83
pierrj
closed
2 years ago
0
braker.pl needs writeable directory (singularity container)
#82
pierrj
closed
1 year ago
16
Update fungap.def?
#81
pierrj
closed
2 years ago
2
Biopython problems
#80
Hoberti
opened
2 years ago
1
Masking genome
#79
Hoberti
opened
2 years ago
6
IndexError: list index out of range
#78
shaobinzhong
closed
2 years ago
32
Installing FunGAP: You do not have .gm_key in your home directory.
#77
ISonets
closed
3 years ago
2
commands in file: [FailedCommands] failed
#76
shaobinzhong
closed
3 years ago
3
ERROR: The HMM file[s] provided for gmhmm do not exist
#75
shaobinzhong
closed
3 years ago
5
OSError: [Errno 2] No such file or directory
#74
shaobinzhong
closed
3 years ago
5
error while testing
#73
a-milano
closed
3 years ago
13
about fungap running
#72
gyudae
closed
3 years ago
4
about the sofyware
#71
ld9866
closed
2 years ago
1
generate_genbank.py
#70
sajjadasaf
closed
2 years ago
1
Braker error
#69
Hua-CM
closed
3 years ago
7
BRAKER error
#68
sajjadasaf
closed
3 years ago
13
Update Docker instructions to v1.1.1
#67
lmtani
closed
3 years ago
0
Missing gene in long-read assembly
#66
fungal-spore
closed
3 years ago
2
Update set_dependencies.py
#65
swelbo
closed
3 years ago
0
[ERROR] You provided wrong BAM FILES. when using fungap.py
#64
Rob-murphys
closed
3 years ago
9
Braker failing
#63
swelbo
closed
3 years ago
11
fungap.conf file not found.
#62
Rob-murphys
closed
3 years ago
4
get_augustus_species.py not downloading anything.
#61
Rob-murphys
closed
3 years ago
1
added singularity
#60
nathaliagg
closed
3 years ago
3
Contributing with singularity container
#59
nathaliagg
closed
3 years ago
1
Error on wrapper_catch_bad_genes step
#58
SolayMane
opened
3 years ago
14
Update INSTALL.md
#57
choilab
closed
3 years ago
0
[ERROR] Invalid BUSCO DATASET
#56
sajjadasaf
closed
3 years ago
3
V1.1.0
#55
mbnmbn00
closed
4 years ago
0
Docker for v1.1.0
#54
lmtani
closed
4 years ago
0
Docker for v1.1.0
#53
lmtani
closed
4 years ago
0
Docker for v1.1.0
#52
lmtani
closed
4 years ago
0
Error in maker step
#51
swelbo
closed
3 years ago
3
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