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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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fix static release build
#1076
glennhickey
closed
1 year ago
0
prep release 2.6.1
#1075
glennhickey
closed
1 year ago
0
Some questions about the use of cactus
#1074
HFzzzzzzz
opened
1 year ago
12
Another --consMemory fix
#1073
glennhickey
closed
1 year ago
0
fix consmemory option in cactus-pangenome
#1072
glennhickey
closed
1 year ago
0
fix cactus-update-prepare replace to print halRemoveGenome instead of…
#1071
glennhickey
closed
1 year ago
0
update hal to fix halReplaceGenome bug
#1070
glennhickey
closed
1 year ago
0
Stuck on "22 jobs are issued and waiting to run"
#1069
kodingkoning
closed
1 year ago
3
update vg to v1.49.0
#1068
glennhickey
closed
1 year ago
0
how to generate a tree
#1067
songxh1996
opened
1 year ago
1
Job failed with exit value 1
#1066
YuChrming
opened
1 year ago
1
add maf_stream consensus duplication filter, and recommend it for phast
#1065
glennhickey
closed
1 year ago
0
Question about installing
#1064
YuChrming
opened
1 year ago
3
--dupeMode parameter for Phast
#1063
rejo27
closed
1 year ago
2
AttributeError in cactus:v2.6.0-gpu
#1062
GRGong
closed
1 year ago
2
How to increase graph coverage?
#1061
sdws1983
closed
1 year ago
3
update to toil 5.11.0
#1060
glennhickey
closed
1 year ago
0
Better refcontigs autodetect
#1059
glennhickey
closed
1 year ago
0
Calling novel variants using giraffe
#1058
iamdeaardappel
opened
1 year ago
1
understand "--clip" in cactus-graphmap-join
#1057
jyj5558
closed
1 year ago
1
Fix chrom ordering in cactus-pangenome
#1056
glennhickey
closed
1 year ago
0
WIP: More Pangenome Slurm support
#1055
glennhickey
closed
1 year ago
1
hprc-graph-filtering-by-allele-frequency guidelines
#1054
peterdfields
closed
1 year ago
2
Better minigraph ordering for phased genomes
#1053
glennhickey
closed
1 year ago
0
fix typo in cactus-hal2chains
#1052
inspirewind
closed
1 year ago
0
Patch vg to fix rare clip bug
#1051
glennhickey
closed
1 year ago
0
Drop _MINIGRAPH_ paths from final output
#1050
glennhickey
closed
1 year ago
5
add chop option for pangenomes
#1049
glennhickey
closed
1 year ago
0
T2t apes
#1048
benedictpaten
closed
1 year ago
0
WIP: Pangenome SLURM support
#1047
glennhickey
closed
1 year ago
1
prep release 2.6.0
#1046
glennhickey
closed
1 year ago
0
update to toil 5.10.0
#1045
glennhickey
closed
1 year ago
0
Shorter default branch length in pangenome mode
#1044
glennhickey
closed
1 year ago
0
WIP: Pangenome Outgroups
#1043
glennhickey
opened
1 year ago
0
WIP: ODGI integration
#1042
glennhickey
closed
1 year ago
0
update to latest taffy
#1041
glennhickey
closed
1 year ago
0
lastz takes all cores
#1040
xiaoyezao
closed
1 year ago
7
Fix --consMemory option
#1039
glennhickey
closed
1 year ago
0
gbz file for vg rna
#1038
xuxingyubio
opened
1 year ago
5
Building a better pangenome
#1037
GeorgeBGM
closed
1 year ago
17
"cactus-align --restart" repeats the same steps and does not proceed to the next steps.
#1036
jyj5558
closed
1 year ago
3
Update cactus_hal2maf.py
#1035
PEHGP
closed
1 year ago
1
Minigraph-cactus result to PanGenie input variant vcf
#1034
ld9866
closed
1 year ago
2
Replacing a Genome
#1033
francicco
opened
1 year ago
22
Guide tree branch lengths
#1032
pedro-mmartins
opened
1 year ago
1
Resume cactus-pangenome
#1031
maggs-x
opened
1 year ago
6
Make input sorting optional in cactus-maf2bigmaf
#1030
glennhickey
closed
1 year ago
1
.full.hal for comparative annotation
#1029
xuxingyubio
opened
1 year ago
0
How to get the index (.xg) of .vg file ?
#1028
ggoodstudydaydayup
closed
1 year ago
2
Step 4 in the minigraph-cactus pipeline
#1027
KristineRosted
opened
1 year ago
1
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