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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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Revert back to SAMPLE#REFERENCE
#1126
glennhickey
closed
1 year ago
0
cactus-pangenome exited
#1125
ZhaoHang-bio
closed
1 year ago
5
Monitoring progress/expected run time?
#1124
evo-eco-gen
closed
1 year ago
2
cactus-graphmap-join error
#1123
majocava
closed
1 year ago
10
prep release v2.6.6
#1122
glennhickey
closed
1 year ago
0
--haplo option to do haplotype sampling preprocessing
#1121
glennhickey
closed
1 year ago
1
Reference species is missing lots of sequences after converting HAL
#1120
emistasis
closed
1 year ago
4
ModuleNotFoundError: No module named 'toil'
#1119
alexvasilikop
closed
1 year ago
1
update to vg 1.50.0
#1118
glennhickey
closed
1 year ago
0
cactus - No such file or directory: 'fasta_chunk' from version 2.6.0
#1117
kleinjoel
closed
1 year ago
4
Incorporating short-read sequence assemblies for SV detection
#1116
whyskyisgray
opened
1 year ago
3
How to visualize a pangenome
#1115
leone93
closed
1 year ago
1
Building a pangenome from pooled contigs
#1114
jyj5558
closed
1 year ago
2
The graph length of pangenome growth, especially when coverage =1 in panacus program.
#1113
wangnan9394
opened
1 year ago
1
Error with latest Minigraph-Cactus version 2.6.5
#1112
brettChapman
opened
1 year ago
3
prep release v2.6.5
#1111
glennhickey
closed
1 year ago
0
update to toil v5.12
#1110
glennhickey
closed
1 year ago
0
ignore numeric and duplicate ancestor labels
#1109
glennhickey
closed
1 year ago
0
How does Minigraph-Cactus treat exactly same contigs from different samples? (and a question on "--otherContig")
#1108
jyj5558
closed
1 year ago
4
Fatal error: progressive_schedule
#1107
pedro-mmartins
closed
1 year ago
4
c++: fatal error: Killed signal terminated program cc1plus on build-tools/downloadPangenomeTools, odgi-v0.8.3, RHEL 8, c++ 10.2.0
#1106
SomePersonSomeWhereInTheWorld
opened
1 year ago
3
fix hal2chains typos
#1105
glennhickey
closed
1 year ago
0
Increasing the genomes of the same species.
#1104
GeorgeBGM
opened
1 year ago
2
'minigraph_construct' job failure
#1103
andreagonzam
closed
1 year ago
3
the Confusion of my Progressive Cactus results
#1102
tongyin121
opened
1 year ago
1
Is there a convenient way to generate multiple pan-genomes based on multiple filter values?
#1101
JanMiao
opened
1 year ago
1
[minigraph]: [E::hts_tpool_init] Couldn't start thread pool worker : Operation not permitted
#1100
BIO894
closed
1 year ago
2
error in cactus-align-batch step
#1099
Wong718
opened
1 year ago
1
Post hprc-v1.1 pangenome
#1098
glennhickey
closed
1 year ago
0
samples aligned per chromosome not consistent
#1097
brianabernathy
opened
1 year ago
6
Fix markdown formatting error
#1096
glennhickey
closed
1 year ago
0
Can building a pan-genome compensate for the limitations of inaccurate detection of structural variations in short-read sequencing?
#1095
jingydz
opened
1 year ago
0
How to restart one job at different machine?
#1094
liu-wq
closed
1 year ago
1
cactus-pangenome in 2.6.4: "error: the following arguments are required jobStore, seqFile", even though they're given.
#1093
TomHarrop
opened
1 year ago
2
prep release 2.6.4
#1092
glennhickey
closed
1 year ago
0
Fix error check that trips up GRCh38 graph with second reference
#1091
glennhickey
closed
1 year ago
0
cactus-pangenome exited due to bgzip failure
#1090
leon945945
opened
1 year ago
4
compile error with taffy
#1089
leon945945
closed
1 year ago
2
Fix maf row order with --dupeMode consensus
#1088
glennhickey
closed
1 year ago
0
Input same x is prefixed by given reference x this is not supported by this version of Cactus
#1087
IsaacDiaz026
opened
1 year ago
3
prep release 2.6.3
#1086
glennhickey
closed
1 year ago
0
only allow stubs from first reference
#1085
glennhickey
closed
1 year ago
0
prep release 2.6.2
#1084
glennhickey
closed
1 year ago
0
add libatomic to docker runtime for odgi
#1083
glennhickey
closed
1 year ago
0
v2.6.1 cannot find libatomic.so.1
#1082
brianabernathy
closed
1 year ago
3
fix --refContigs in cactus-graphmap-split
#1081
glennhickey
closed
1 year ago
0
fix typo problem in gaf export
#1080
glennhickey
closed
1 year ago
0
Add updated dog and chicken pangenome examples
#1079
glennhickey
closed
1 year ago
0
Problem with reproducing Cactus-pangenome example
#1078
BlackSlipper
closed
1 year ago
1
Question about simplify the graph
#1077
ETC100
closed
1 year ago
1
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