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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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Only push tagged commits
#1176
glennhickey
closed
1 year ago
0
make sure all references in final gfa header
#1175
glennhickey
closed
1 year ago
0
quieter unit tests
#1174
glennhickey
closed
1 year ago
0
Port to Openstack CI
#1173
adamnovak
closed
1 year ago
1
cactus-pangenome --reference with multiple reference genomes differs for small and large pangenomes?
#1172
dirkjanvw
closed
1 year ago
4
boost filter_paf_deletions job reqs
#1171
glennhickey
closed
1 year ago
0
Unexpected character error with sanitize_fasta_header
#1170
CDeMasi
opened
1 year ago
8
Failed to run example code with error in MergeChunks
#1169
BitaoQiu
closed
1 year ago
2
An error in halMergeChroms
#1168
zhangqing970
opened
1 year ago
2
Assertion `!flower_builtBlocks(flower)' failed.
#1167
aziesel
opened
1 year ago
3
Pangenome graphs with only Structural Variants
#1166
gsc74
closed
1 year ago
2
terminate called after throwing an instance of 'thrust::system::detail::bad_alloc'
#1165
chenzhao12
opened
1 year ago
1
update to vg 1.51.0
#1164
glennhickey
closed
1 year ago
0
add seqfile download command to docker run example
#1163
glennhickey
closed
1 year ago
0
halLiftover gives wrong strand information
#1162
WagnerNils
opened
1 year ago
1
ERROR: Signal 11 occurred. VG has crashed.
#1161
pengyan19
opened
1 year ago
1
Fail to run the example using docker
#1160
BKU-Technion
closed
1 year ago
1
Running cactus on AWS: vCPU limit error
#1159
tinaveit
opened
1 year ago
1
Error running test example
#1158
aziesel
opened
1 year ago
3
hal2maf seems to overestimate RAM usage
#1157
jmrussell
opened
1 year ago
0
population genotype
#1156
pengyan19
closed
1 year ago
3
cactus-pangenome, Other options with --viz
#1155
gavinieong
opened
1 year ago
1
add blurb about hprc mafs
#1154
glennhickey
closed
1 year ago
0
Adjusting minigraph -j parameter within cactus-pangenome pipeline
#1153
IsaacDiaz026
closed
1 year ago
1
maxMemory problems
#1152
shuifeng1988
opened
1 year ago
1
Please help me. I don't know how to use cactus on slurm.
#1151
Liuti-ynu
opened
1 year ago
2
How to get the 'pangenome' of all mammals?
#1150
liu-wq
opened
1 year ago
2
Minigraph-cactus cannot properly split the chromosomes
#1149
yykaya
closed
1 year ago
3
Have --consMemory override hal export job too (if specified)
#1148
glennhickey
closed
1 year ago
0
Update hal
#1147
glennhickey
closed
1 year ago
0
Add warning message for big mash dist
#1146
glennhickey
closed
1 year ago
0
Cactus graph map split fails on rgfa-split step
#1145
IsaacDiaz026
closed
1 year ago
4
Runtime Error
#1144
cutykaka
closed
1 year ago
2
Replace latest fly pangenome
#1143
glennhickey
closed
1 year ago
0
Enforce exactly 2 tips per component
#1142
glennhickey
closed
1 year ago
0
boost some job memory specs in light of 16-fly logging
#1141
glennhickey
closed
1 year ago
0
add new fly pangenome
#1140
glennhickey
closed
1 year ago
0
error: cannot allocate memory
#1139
lyt57
opened
1 year ago
6
Error of running on GPU cluster
#1138
polchan
closed
1 year ago
5
fix off-by-1 error in sample name extraction
#1137
glennhickey
closed
1 year ago
0
Issued jobs
#1136
shuifeng1988
closed
1 year ago
3
Installation from release failed with python3.11
#1135
jowodo
closed
1 year ago
6
prep release 2.6.7
#1134
glennhickey
closed
1 year ago
0
update gfaffix
#1133
glennhickey
closed
1 year ago
0
append reference contigs lost after the pangenome pipeline?
#1132
jyj5558
closed
11 months ago
4
cactus-hal2chains FileNotFoundError: [Errno 2] bed file
#1131
syngnathid
opened
1 year ago
1
Adding a new way to pick the primary alignments used to construct the…
#1130
benedictpaten
closed
1 year ago
8
Error running Cactus on Slurm cluster
#1129
philge
opened
1 year ago
8
Snarl with many nodes
#1128
IsaacDiaz026
opened
1 year ago
5
Fix awk arithmatic issue due to large contig sizes
#1127
glennhickey
closed
1 year ago
0
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