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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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[Errno 2] No such file or directory: 'singularity'
#1222
polchan
closed
1 year ago
3
prep release 2.6.12
#1221
glennhickey
closed
1 year ago
0
fix hal/vg export --consMemory overrides
#1220
glennhickey
closed
1 year ago
0
Aligning maf to positive chain
#1219
Alchimic007
closed
1 year ago
2
long time in the segalign_repeat fo the segalign step
#1218
ld9866
closed
1 year ago
1
after build , no cactus-pangenome bin file
#1217
lixiang117423
closed
1 year ago
1
fix typo in singularity / gpu option handling
#1216
glennhickey
closed
1 year ago
0
prep release v2.6.11
#1215
glennhickey
closed
1 year ago
0
remove assert False
#1214
glennhickey
closed
1 year ago
0
UnboundLocalError: local variable 'gpu' referenced before assignment
#1213
polchan
closed
1 year ago
2
`cactus-pangenome` with fragmented draft assemblies drops contigs
#1212
MarionPerrier
closed
1 year ago
3
prep release 2.6.10
#1211
glennhickey
closed
1 year ago
0
rescue tiny reference contigs from paf filter
#1210
glennhickey
closed
1 year ago
0
About the paper "Progressive Cactus is a multiple-genome aligner for the thousand-genome era"
#1209
taoqxtaozi
opened
1 year ago
2
keep sample haps together in event of mash ties
#1208
glennhickey
closed
1 year ago
0
run full hal tests in CI
#1207
glennhickey
closed
1 year ago
0
progressive workflow job failing on slurm
#1206
MCH74
closed
1 year ago
3
update taffy to fix norm -d bug
#1205
glennhickey
closed
1 year ago
0
Force single_machine inside cactus docker
#1204
glennhickey
closed
1 year ago
0
add wheel to pip update, apparently helps for newer python
#1203
glennhickey
closed
1 year ago
1
cactus breaks contiguous `s` lines in MAF creating artificial duplicates
#1202
sivico26
opened
1 year ago
4
Size attribute in MAF alignments sometimes does not match the ungapped length of the same sequence.
#1201
sivico26
closed
1 year ago
13
Err No 8: Exec format error: 'cactus_sanitizeFastaHeaders'
#1200
Rahul-bio
closed
1 year ago
1
update to latest vg release, 1.52.0
#1199
glennhickey
closed
1 year ago
0
When I run cactus-pangenome command, there is an error related to “pangenome_end_to_end_workflow”
#1198
tanger-code
opened
1 year ago
9
When I run cactus-pangenome on the cluster, there are many errors like :[toil.batchSystems.slurm] sbatch command failed; [Errno 2] No such file or directory: 'sbatch'
#1197
tanger-code
closed
1 year ago
0
Push tag in makeCpuDockerRelease
#1196
glennhickey
closed
1 year ago
0
prep release v2.6.9
#1195
glennhickey
closed
1 year ago
0
boost lastz disk for segalign
#1194
glennhickey
closed
1 year ago
0
default to latest release in --binariesMode docker
#1193
glennhickey
closed
1 year ago
0
update GFAffix to 0.1.5b
#1192
glennhickey
closed
1 year ago
0
Is there a graph in HPRC that contains HG002？Or is there a vcf file that is unique to HG002?
#1191
tanger-code
closed
1 year ago
1
fix docker mem override bug
#1190
glennhickey
closed
1 year ago
0
Set HAPLOTYPE=0 by default for ref contigs in chromosome graphs
#1189
glennhickey
closed
1 year ago
0
the sv coords in query genomes
#1188
wu123tj
opened
1 year ago
1
Boost memory requirements to make docker binaries with slurm more stable
#1187
glennhickey
closed
1 year ago
0
rGFA support (experimental)
#1186
glennhickey
opened
1 year ago
0
Errors with latest version of minigraph cactus
#1185
CEPHAS-01
closed
1 year ago
3
RuntimeError: Branch length
#1184
vinitamehlawat
opened
1 year ago
6
How to use cactus-hal2maf under MPI model
#1183
maomao2023
opened
1 year ago
1
--consMemory to override hal2vg as well
#1182
glennhickey
closed
1 year ago
0
make makeCpuDockerRelease executable
#1181
glennhickey
closed
1 year ago
0
move quay docker build out of ci into release script (as done for gpu)
#1180
glennhickey
closed
1 year ago
0
prep release v2.6.8
#1179
glennhickey
closed
1 year ago
0
thrust::system::system_error | CUDA free failed: cudaErrorCudartUnloading
#1178
chenhijy
opened
1 year ago
2
move 'will not be attached' message to debug
#1177
glennhickey
closed
1 year ago
0
Only push tagged commits
#1176
glennhickey
closed
1 year ago
0
make sure all references in final gfa header
#1175
glennhickey
closed
1 year ago
0
quieter unit tests
#1174
glennhickey
closed
1 year ago
0
Port to Openstack CI
#1173
adamnovak
closed
1 year ago
1
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