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ComparativeGenomicsToolkit
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cactus
Official home of genome aligner based upon notion of Cactus graphs
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use new toil interface for auto cache disable
#1275
glennhickey
closed
10 months ago
0
remove debug print/assert that was accidentally merged (and released)
#1274
glennhickey
closed
10 months ago
0
"reference/target" coordinates in "query" columns in chain file converted from hal? And about batch mode
#1273
wshuchen
closed
10 months ago
1
The cacuts operation has stopped, but there is no error message recorded in the log file.
#1272
panpandzf
closed
10 months ago
1
Error; possibility of Omitting 'sanitize-fasta-header'
#1271
dmjask
closed
10 months ago
5
prep release v2.7.1
#1270
glennhickey
closed
10 months ago
0
fix bug in --xg option where it only works with --gbz
#1269
glennhickey
closed
10 months ago
0
Interface for making outgroup selection sex-chromosome aware
#1268
glennhickey
closed
10 months ago
0
update to vg 1.54
#1267
glennhickey
closed
10 months ago
0
update to Toil 6.0.0
#1266
glennhickey
closed
10 months ago
0
update to latest taffy
#1265
glennhickey
closed
10 months ago
0
update abPOA to v1.5.1
#1264
glennhickey
closed
10 months ago
0
Fix Dockerfile to include phast binares
#1263
glennhickey
closed
10 months ago
0
msa_view seems to be missing from the cactus:v2.7.0 docker image
#1262
brantfaircloth
closed
10 months ago
1
Job uses more disk than requested with singularity
#1261
syresbr
closed
10 months ago
6
track upstream abpoa directly; update to latest release
#1260
glennhickey
closed
10 months ago
0
Primate example
#1259
jonahcullen
closed
10 months ago
4
update to latest odgi
#1258
glennhickey
closed
10 months ago
0
I want to follow Minigraph-Cactus paper to make Figure 4 and Supplementary Figure 15
#1257
BlackSlipper
closed
10 months ago
4
--indexMemory now sets upper-limit of all chromosome jobs
#1256
glennhickey
closed
10 months ago
0
Job failed with exit value 1: 'progressive_workflow'
#1255
ndeimler99
closed
10 months ago
0
Cactus failing invert_alignments for the provided example, need help troubleshooting
#1253
IshaanSD
closed
11 months ago
1
toil.jobStores.abstractJobStore.NoSuchFileException: File 'rootJobReturnValue' does not exist.
#1251
lixiang117423
closed
11 months ago
3
Minigraph-cactus for grep the none-reference
#1250
ld9866
opened
11 months ago
1
add link to zoonomia download page
#1249
glennhickey
closed
11 months ago
0
try to orient bar jobs on reference to left-align downstream
#1248
glennhickey
opened
11 months ago
0
Update README.md to point to Discussions
#1247
diekhans
closed
11 months ago
0
add note about fixing sam header if surjecting off-reference
#1245
glennhickey
closed
11 months ago
0
Constructing pan-genome
#1244
Tonitsk8264
closed
11 months ago
5
Mingraph-Cactus final GFA file format
#1243
Xuelei-Dai
closed
11 months ago
1
prep release 2.7.0
#1242
glennhickey
closed
11 months ago
0
Add back --xg option to the pangenome pipeline
#1241
glennhickey
closed
11 months ago
0
Publish SA Hackathon Tutorial
#1240
glennhickey
closed
11 months ago
0
update to vg 1.53
#1239
glennhickey
closed
11 months ago
0
Fix job dependency bug in cactus-pangenome --noSplit
#1238
glennhickey
closed
11 months ago
0
How to use Minigraph-cactus pan genome to poplualtion analysis
#1237
ld9866
closed
11 months ago
2
minigraph-cactus result gfa to 1.0 version
#1236
ld9866
closed
11 months ago
2
add cactus-pangenome --noSplit option
#1235
glennhickey
closed
11 months ago
0
AssertionError: More than 1 node for blast in config XML
#1234
taoqxtaozi
opened
11 months ago
3
FileNotFoundError: [Errno 2] No such file or directory: 'mash'
#1233
HFzzzzzzz
opened
11 months ago
1
failed to run cactus
#1232
liuyongming0612
opened
12 months ago
3
Error: impl/poaBarAligner.c:604:9: error: too few arguments to function ‘abpoa_msa’
#1231
ggoodstudydaydayup
opened
12 months ago
2
update release notes with chaining change blurb
#1230
glennhickey
closed
11 months ago
0
prep release v2.6.13
#1229
glennhickey
closed
1 year ago
0
Lower defautl minigraph construct memory; add override option
#1228
glennhickey
closed
1 year ago
1
Error running Cactus with SLURM: 'bad interpreter: No such file or directory'
#1227
pc363449207
opened
1 year ago
1
remove os.remove before deleteGlobalFile
#1226
glennhickey
closed
1 year ago
0
fix gfaffix dont_collapse regex
#1225
glennhickey
closed
1 year ago
0
Memory isssue while running cactus-hal2maf
#1224
Alchimic007
opened
1 year ago
10
More informative error message for nested containerization.
#1223
glennhickey
closed
1 year ago
0
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