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ComputationalRegulatoryGenomicsICL
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GenomicInteractions-old
R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics
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Centralizing GInteractions into GenomicInteractions
#37
LTLA
opened
5 years ago
10
Trouble using GenomicInteractions::mcols(genomic_interaction_object)
#36
jamesdalg
opened
5 years ago
1
More flexible InteractionTrack.
#35
MalteThodberg
opened
6 years ago
6
Error in the version 1.10.0
#34
tiagochst
closed
7 years ago
1
Highlight specific interaction
#33
tiagochst
closed
7 years ago
1
How to intersect of two GenomicInteraction Objects?
#32
Zefeng-Wu
closed
7 years ago
2
added asBED method
#31
mgperry
closed
8 years ago
0
changes for using InteractionSet backend
#30
liz-is
opened
8 years ago
0
distance calculation
#29
liz-is
closed
8 years ago
2
tidy up imports
#28
liz-is
closed
8 years ago
1
rewrite summariseByFeatures
#27
liz-is
opened
8 years ago
0
integrate viewpoints plotting code with Gviz
#26
liz-is
opened
8 years ago
0
write 'updateObject' function for new GenomicInteractions class definition
#25
liz-is
closed
8 years ago
2
update HiC vignette
#24
liz-is
closed
8 years ago
1
update ChIAPET vignette
#23
liz-is
closed
8 years ago
2
update documentation
#22
liz-is
closed
8 years ago
1
version bump
#21
liz-is
closed
9 years ago
0
version bump
#20
liz-is
closed
9 years ago
0
fixed 'shift' issues
#19
liz-is
closed
9 years ago
0
Changes for Submission
#18
mgperry
closed
9 years ago
0
Revert "Changes for Submission"
#17
mgperry
closed
9 years ago
0
Changes for Submission
#16
mgperry
closed
9 years ago
0
Consolidate branches after bioc changes
#15
liz-is
closed
9 years ago
0
plotRegion code; fix for gridExtra update
#14
liz-is
closed
9 years ago
0
importing data from new version of hiclib
#13
liz-is
opened
9 years ago
0
Bugfixes
#12
liz-is
closed
9 years ago
0
Bugfixes
#11
liz-is
closed
9 years ago
0
Consolidate branches after bioc release
#10
liz-is
closed
9 years ago
0
Master
#9
mgperry
closed
9 years ago
0
viewpoints changes
#8
mgperry
closed
9 years ago
0
update plotting code to work with gviz
#7
iwanttobeabadger
closed
8 years ago
2
Write tests!
#6
liz-is
closed
8 years ago
2
Refactor GenomicInteractions class to use mcols functionality from S4Vectors::Vector
#5
mgperry
closed
8 years ago
1
sort() fails if metadata columns are not the same
#4
mgperry
closed
9 years ago
1
Improve summarise functionality
#3
iwanttobeabadger
closed
8 years ago
0
Annotate/summarise by pairs
#2
iwanttobeabadger
closed
8 years ago
0
Added README.md and fixed DESCRIPTION
#1
mgperry
closed
9 years ago
0