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DCAN-Labs
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abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
BSD 3-Clause "New" or "Revised" License
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Fixed DWI PA fmaps IF field
#89
tpandhi
closed
2 weeks ago
0
Allows conversion of subject data in cases where # AP vs PA fmaps are different after QC filter
#88
LuciMoore
opened
2 months ago
0
update qc and siemens unpack
#87
rosemccollum
closed
5 months ago
0
Update src README.md
#86
rosemccollum
closed
7 months ago
0
fix pandas parser error
#85
rosemccollum
closed
8 months ago
0
improve ERI grabbing/assigment
#84
rosemccollum
closed
8 months ago
0
Bump cryptography from 41.0.6 to 42.0.4 in /src
#83
dependabot[bot]
closed
2 weeks ago
1
Update abcd_dcm2bids.conf JSON file for Dcm2Bids v3.1.1
#82
ericearl
opened
8 months ago
0
Bump cryptography from 41.0.6 to 42.0.2 in /src
#81
dependabot[bot]
closed
8 months ago
1
run_order_fix.py is hard-coded to ses-baselineYear1Arm1
#80
ericearl
opened
9 months ago
0
updated config file for DV26
#79
rosemccollum
closed
9 months ago
0
Bump cryptography from 41.0.6 to 42.0.0 in /src
#78
dependabot[bot]
closed
8 months ago
1
fix indentation and error
#77
rosemccollum
closed
10 months ago
0
Updated pull request 74 to exclude Siemens removal
#76
GregConan
closed
10 months ago
1
Siemens DWI bvec bvals
#75
audreymhoughton
closed
4 months ago
0
Remove BVAL and BVEC injection from DWI data outside GE DV25-28
#74
ericearl
closed
10 months ago
1
Bump cryptography from 41.0.4 to 41.0.6 in /src
#73
dependabot[bot]
closed
11 months ago
0
update config file for GE subjects
#72
rosemccollum
closed
11 months ago
0
ERROR setting up DWI: (Philips and GE) software version not recognized
#71
ericearl
closed
7 months ago
4
Concat and Append
#70
MIZwally
closed
1 year ago
0
Updates to the main branch README
#69
MIZwally
closed
9 months ago
1
Version of dcmtk
#68
MIZwally
closed
1 year ago
1
Update SciPy Version in `src/requirements.txt`
#67
MIZwally
closed
12 months ago
1
Clarify Directions for Usage
#66
MIZwally
closed
1 year ago
1
Bump cryptography from 39.0.1 to 41.0.3 in /src
#65
dependabot[bot]
closed
12 months ago
2
Bump cryptography from 39.0.1 to 41.0.2 in /src
#64
dependabot[bot]
closed
1 year ago
1
Bump scipy from 1.4.1 to 1.10.0 in /src
#63
dependabot[bot]
closed
12 months ago
2
Dicom2bids issue after Siemens upgrade - no pairing
#62
ebeanato
opened
1 year ago
3
46 ge scanners
#61
begim-f
closed
1 year ago
0
Bump cryptography from 39.0.1 to 41.0.0 in /src
#60
dependabot[bot]
closed
1 year ago
1
Adjust dcm2bids config for new Philips scanner version
#59
audreymhoughton
closed
9 months ago
1
abcd-dicom2bids fails with scans in tabular release
#58
gsudre
closed
2 months ago
3
DWI grads for Philips version 5.6.1
#57
gsudre
closed
7 months ago
1
Remove MatLab eta-squared function and replace with Python
#56
audreymhoughton
closed
7 months ago
1
Remove FSL and replace with nibabel
#55
audreymhoughton
closed
7 months ago
1
Bump future from 0.18.2 to 0.18.3 in /src
#54
dependabot[bot]
closed
1 year ago
1
Replace s3cmd with NDA downloadcmd
#53
perronea
closed
1 year ago
0
Dependabot/pip/src/cryptography 39.0.1
#52
perronea
closed
1 year ago
0
Bump cryptography from 3.2.1 to 39.0.1 in /src
#51
dependabot[bot]
closed
1 year ago
0
Running abcd2bids.py ends with a FileNotFoundError, however it doesnt affect the overall outputs
#50
lundq163
closed
1 year ago
6
Pull new updates from the develop branch
#49
perronea
closed
1 year ago
0
Replace NDA Token Generator with downloadcmd
#48
perronea
closed
1 year ago
0
dcm2bids error number of volumes
#47
perronea
closed
11 months ago
1
dcm2bids is incorrectly labeling some SEFMs from GE scanners
#46
perronea
closed
1 year ago
2
Bump numpy from 1.18.5 to 1.22.0 in /src
#45
dependabot[bot]
closed
1 year ago
1
BIDS validator failing after conversion
#44
ericearl
closed
1 year ago
2
Only operates on text EventRelatedInformation
#43
mriedel56
closed
8 months ago
2
Removing RawStorage
#42
mriedel56
closed
2 months ago
1
Bump numpy from 1.18.5 to 1.21.0 in /src
#41
dependabot[bot]
closed
2 years ago
1
Data with "Replaced" rows in abcd_fastqc01 no longer works as expected
#40
ericearl
closed
2 years ago
11
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