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DIAGNijmegen
/
rse-panimg
Conversion of medical images to MHA and TIFF.
Apache License 2.0
13
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5
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Calculate slice spacing without assuming axial slices
#60
nlessmann
closed
2 years ago
0
Slice spacing is not calculated correctly if slices are not axial
#59
nlessmann
closed
2 years ago
0
Require at least numpy 1.21
#58
nlessmann
closed
2 years ago
0
Require at least SimpleITK 2.0
#57
nlessmann
closed
2 years ago
0
Remove duplicate except clause
#56
HarmvZ
closed
2 years ago
0
UnboundLocalError local variable 'simple_itk_image' referenced before assignment
#55
jmsmkn
closed
2 years ago
0
Fix extra metadata defaults
#54
HarmvZ
closed
2 years ago
1
Bump version to 0.5.0
#53
HarmvZ
closed
2 years ago
0
Add extra metadata from DICOM and ITK images as fields to PanImg objects
#52
HarmvZ
closed
2 years ago
0
Add extra DICOM and ITK metadata as PanImg fields
#51
HarmvZ
closed
2 years ago
1
Improve existing attribute check for optional metadata fields
#50
HarmvZ
closed
2 years ago
0
Allow for array-like window center and width headers in MHA files
#49
chrisvanrun
closed
2 years ago
5
Simplify 4D ITK loading
#48
chrisvanrun
closed
2 years ago
7
Add image builder for NRRD files
#47
nlessmann
closed
3 years ago
2
Add support for vips 8.10
#46
jmsmkn
closed
3 years ago
0
Allow non-pathology tiff file conversion
#45
HarmvZ
opened
3 years ago
5
Processing 4D MHA results in mangled TransformMatrix
#44
chrisvanrun
closed
2 years ago
9
Added option to only traverse top-level directory
#43
amickan
closed
3 years ago
0
Add a `recurse_subdirectories: bool = True` kwarg to `convert`
#42
jmsmkn
closed
3 years ago
0
e2e support
#41
amickan
closed
3 years ago
0
.e2e file support
#40
amickan
closed
3 years ago
0
Aperio image converted to tiff gets color encoding YCbCr, even when original is RGB
#39
miriam-groeneveld
opened
3 years ago
2
I got "GDCM is unavailable"
#38
hihunjin
closed
3 years ago
1
install openslide on ubuntu 18.04
#37
hihunjin
closed
3 years ago
1
Integrate fds and fda support into panimg
#36
amickan
closed
3 years ago
0
Disable E2E OCT support
#35
HarmvZ
closed
3 years ago
1
Temporarily disable processing of fundus images
#34
HarmvZ
closed
3 years ago
0
Replace gdcm with pylibjpeg
#33
jmsmkn
closed
3 years ago
1
removed fundus image extraction from oct converter
#32
amickan
closed
3 years ago
2
Add click cli
#31
jmsmkn
closed
3 years ago
0
Add a CLI with click
#30
jmsmkn
closed
3 years ago
0
Move matrix manipulations from oct.py to fds and fda functions
#29
amickan
closed
3 years ago
3
Removes unused code from oct-converter
#28
jmsmkn
closed
3 years ago
0
Oct converter added to default image builders
#27
amickan
closed
3 years ago
2
Avoid division by zero when computing slice spacing when there is only one slice
#26
nlessmann
closed
3 years ago
2
Release v0.2.1
#25
jmsmkn
closed
3 years ago
0
Add test for reading enhanced DICOM
#24
nlessmann
closed
2 years ago
2
Improve support for Enhanced DICOM
#23
nlessmann
closed
2 years ago
6
Raise errors only when dependencies are necessary
#22
jmsmkn
closed
3 years ago
0
Raise import errors only when libopenslide/libvips are actually needed
#21
nlessmann
closed
3 years ago
1
Make vips and openslide optional dependencies
#20
nlessmann
closed
3 years ago
0
Return generators from builders
#19
jmsmkn
closed
3 years ago
0
Add post processors
#18
jmsmkn
closed
3 years ago
0
Remove modification of input directories
#17
jmsmkn
closed
3 years ago
0
Update tifffile
#16
jmsmkn
closed
3 years ago
0
Add basic mypy checks
#15
jmsmkn
closed
3 years ago
1
Remove dependency on tifffile = "2019.1.4"
#14
jmsmkn
closed
3 years ago
1
Add deployment action and update readme
#13
jmsmkn
closed
3 years ago
0
Add CI tests
#12
jmsmkn
closed
3 years ago
0
Add GitHub Actions
#11
jmsmkn
closed
3 years ago
1
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