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DaehwanKimLab
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hisat2
Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
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error in installation: Symbol not found ... libstdc++.6.dylib
#239
axolootle
opened
4 years ago
0
Dev python3
#238
parkchanhee
closed
4 years ago
0
incompatible with the VCF file error
#237
a00101
opened
4 years ago
2
hisat2_read_statistics.py: Syntax Error in reads_stat()
#236
afaranda
opened
4 years ago
1
python3
#235
parkchanhee
closed
4 years ago
0
Support python3
#234
parkchanhee
closed
4 years ago
0
SAM options missing from --help
#233
sammyjava
opened
4 years ago
0
hisat2 fails to run if there are reads <20bp
#232
dvera
opened
4 years ago
0
High and seemingly random memory usage
#231
epruesse
opened
4 years ago
0
Can structural variants be put as making graph genome building?
#230
a00101
opened
4 years ago
0
Error: Encountered internal HISAT2 exception (#1)
#229
MjelleLab
opened
4 years ago
5
hisat2 for variant calling problem.
#228
a00101
opened
4 years ago
0
some right reads assiged to unmapped
#227
gnilihzeux
opened
4 years ago
1
index 3.ht2l file is empty when building the indexes
#226
cmonat
closed
4 years ago
4
Remove all hisatgenotype specific scripts
#225
chbe-helix
opened
4 years ago
0
Remove hisatgenotype codes
#224
parkchanhee
closed
4 years ago
0
Release/2.2.0
#223
parkchanhee
closed
4 years ago
0
Sample order matters?
#222
louislamont
opened
4 years ago
4
cannot extract snpfrom customed vcf
#221
chengarthur
opened
4 years ago
1
align reads to N contingous in the genome
#220
duzc-Repos
closed
4 years ago
4
(ERR): hisat2-align exited with value 141
#219
naumenko-sa
opened
4 years ago
5
hisat2_extract_snps_haplotypes_VCF.py giving empty output
#218
chandrans
opened
4 years ago
5
phasing
#217
cjieming2
opened
4 years ago
0
Hisat2-build not working when using the ss and exon option
#216
sk1350
opened
4 years ago
1
hla typing documentation
#215
cjieming2
opened
4 years ago
0
Clarification on HISAT2 default behavior regarding chrname
#214
MatteoSchiavinato
closed
4 years ago
6
hisat2 not choosing the large-index aligner when large index is given
#213
MatteoSchiavinato
closed
4 years ago
6
logic error in hisat2_extract_snps_haplotypes_VCF.py
#212
verne91
opened
5 years ago
2
hisat2 refuses to multithread against small reference genome such as sorghum
#211
kehey
opened
5 years ago
0
How to use hisat2_extract_snps_haplotypes_vcf.py for the VCFs without variant ID?
#210
verne91
closed
5 years ago
2
Hisat2 graph for non-human genomes
#209
dcopetti
opened
5 years ago
1
Remove adjacnet snps should be discovered on pre-processing
#208
mchaisso
opened
5 years ago
0
(ERR): hisat2-align exited with value 137
#207
Jiam1ng
opened
5 years ago
0
How are single exon transcripts assigned strand in non-strand-specific data?
#206
kmegquier
opened
5 years ago
0
Wrong sign of tlen (the 9th column) of sam output
#205
dbrg77
closed
5 years ago
2
hisatgenotype_v1.1.2_beta-devel build-genome gives some empty files
#204
mariafiruleva
closed
5 years ago
7
Error during runing alignment .
#203
sdabral05
opened
5 years ago
16
Issues with --score-min values in local vs end-to-end mode
#202
FelixKrueger
closed
5 years ago
2
Fix compilation on FreeBSD
#201
dnebdal
opened
5 years ago
0
non-ACGT penalty not invoked
#200
cdarby
closed
5 years ago
2
exon features reported by extract_exons.py for overlapping exons on opposite strand
#199
vkkodali
opened
5 years ago
0
Documentation for --exon and --ss
#198
mbelmadani
opened
5 years ago
0
Read not aligned by HISAT2, NCBI blast aligns 100% to Refseq mRNA
#197
yasirs
opened
5 years ago
3
HISAT2 -p: producing bam files of different size
#196
laurabuggiotti
opened
5 years ago
2
I think I have a related issue. My hisat2 align just fails. It runs for whatever time I provide but the sam file is size 0. No errors are produced. I have been error testing by removing unnecessary parts of the command.
#195
jokelley
opened
5 years ago
0
hisat2 build using genome and transcriptome
#194
Zunaick
opened
5 years ago
0
python3.5 can run this method
#193
loganylchen
opened
5 years ago
0
subprocess.PIPE is a bytes
#192
loganylchen
closed
5 years ago
0
Support CMake
#191
parkchanhee
closed
5 years ago
0
Seed
#190
parkchanhee
closed
5 years ago
0
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