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DaehwanKimLab
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hisat2
Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
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Conversion table regex error for HISAT-3N: `terminate called after throwing an instance of 'std::regex_error'`
#285
metamaden
closed
3 years ago
4
MacOS “hisat2-align-s” cannot be opened because the developer cannot be verified.
#282
daryapotanina
opened
3 years ago
0
Fix imp DeprecationWarning in hisat2-inspect
#281
chilampoon
closed
3 years ago
1
hisat2:"--read-lengths" does not exist
#280
ChengyueT
opened
3 years ago
1
Clarify reporting options for multi-mapping reads.
#279
ewallace
opened
3 years ago
0
Reduced mapping rate v2.2.1 vs v2.1.0
#278
rhughwhite
opened
3 years ago
0
CYP Genotyping
#277
kokyriakidis
opened
3 years ago
0
hisat2-2.2.1: Calculated TLEN value seems wrong
#276
mmokrejs
opened
3 years ago
1
hisat2-2.2.1: cannot detect 10nt deletion due to overly strict default thresholds
#275
mmokrejs
opened
3 years ago
0
Primary and secondary alignments are output over very same locus, just increasing redundant clutter in secondary matches
#274
mmokrejs
opened
3 years ago
0
HISAT2 vs STAR
#273
asilvestris84
opened
3 years ago
0
Virtually 0 reads aligned (while on same dataset STAR aligns successfully)
#272
scogi
closed
3 years ago
1
Question about different behaviour between Tophat2 and Hisat2
#271
X-Mialhe
opened
3 years ago
0
fixed a typo in the link
#270
parkchanhee
closed
3 years ago
0
Changed the download links of Mouse genome to the biohpc server.
#269
parkchanhee
closed
3 years ago
0
repeat related options in hisat2-build and hisat2
#268
VictorZheng1010
opened
3 years ago
1
"local graph exploded" warning when running hisat2-build with snp and transcriptome?
#267
VictorZheng1010
opened
3 years ago
9
HISAT-genotype model for HLA allele abundance estimates
#266
rtobes
opened
3 years ago
1
AssertionError: Assert fq_fname_base when using Bam file as input
#265
NTNguyen13
closed
3 years ago
0
Changing the number of threads gives subtly different results
#264
akaviaLab
opened
3 years ago
0
Updated download links
#263
parkchanhee
closed
3 years ago
0
HISAT2 repeat function
#262
asilvestris84
opened
3 years ago
1
Update download links to the AWS links
#261
parkchanhee
closed
3 years ago
0
Error: Encountered exception: 'Nongraph exception` when building index from TransDecoder
#260
jolespin
opened
3 years ago
2
Can we combine paired and single reads in the same run?
#259
StromTroopers
opened
3 years ago
0
Release/2.2.1
#258
parkchanhee
closed
3 years ago
0
The newest build in bioconda doesn't print version information
#257
yuifu
opened
3 years ago
0
Phased SNP information for allele specific RNA-seq analysis?
#256
zhang-jiankun
opened
3 years ago
0
hisat2_read_statistics.py fails to infer FASTQ input
#255
egaffo
opened
3 years ago
1
Having troubles building index with variation
#254
jonassibbesen
opened
4 years ago
5
Tasks/multirepeatindex
#253
parkchanhee
closed
4 years ago
0
Different mapping results between HISAT and TopHat
#252
ConcettaDe4
opened
4 years ago
0
use the simde header library for greater compatibility
#251
mr-c
opened
4 years ago
13
Make build reproducible
#250
mr-c
opened
4 years ago
0
Enable the passing of extra compilation flags, for hardening
#249
mr-c
opened
4 years ago
0
Dev readstatistics
#248
parkchanhee
closed
4 years ago
0
Dev readstatistics
#247
parkchanhee
closed
4 years ago
0
hisatgenotype_locus.py "TypeError: 'NoneType' object is not iterable"
#246
Piccetteeno
closed
3 years ago
3
`--read-lengths arg must be at least 20` (HISAT2 version 2.2.0)
#245
kubu4
closed
4 years ago
1
Is this software can support aarch64(arm64) platform
#244
darmac
opened
4 years ago
1
Variants calling from HISAT2 alignment file (.sam)?
#243
sekhwal
opened
4 years ago
0
ERROR while aligning with HISAT2
#242
sekhwal
opened
4 years ago
6
How to Align one fastq with reference using HISAT2
#241
sekhwal
opened
4 years ago
0
hisat2-build error
#240
gwajnberg
closed
4 years ago
1
error in installation: Symbol not found ... libstdc++.6.dylib
#239
axolootle
opened
4 years ago
0
Dev python3
#238
parkchanhee
closed
4 years ago
0
incompatible with the VCF file error
#237
a00101
opened
4 years ago
2
hisat2_read_statistics.py: Syntax Error in reads_stat()
#236
afaranda
opened
4 years ago
1
python3
#235
parkchanhee
closed
4 years ago
0
Support python3
#234
parkchanhee
closed
4 years ago
0
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