issues
search
DaehwanKimLab
/
hisat2
Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
464
stars
112
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Python API for alignment
#334
silenus092
opened
2 years ago
0
Strand conversion mismatch rate?
#333
aleighbrown
closed
2 years ago
2
HISAT-3N indexing with SNPs never seems to have enough memory?
#332
aleighbrown
opened
2 years ago
9
Methylation output of hisat-3n
#331
zhangzhiyangcs
opened
2 years ago
3
Methylation output of hisat-3n
#330
zhangzhiyangcs
closed
2 years ago
0
Aligning Ribo-seq reads using hisat2
#329
zhiyi1988
opened
2 years ago
0
[Feature request] Add tag for reporting number of converted/unconverted bases
#328
y9c
closed
2 years ago
7
Error while proceesing .bam file in cufflinks
#327
shanmugavadivelps
opened
2 years ago
4
Error in aligning paired end fastq.gz files
#326
anuneena
closed
2 years ago
0
Hisat3n | Masked genome
#325
ezecalvo
closed
2 years ago
8
`hisat-3n-table` report segmentation fault for certain cigar.
#324
y9c
closed
2 years ago
5
Expected overall alignment rate when including the variations in reference genome indexing
#323
GuoanQi1996
opened
2 years ago
2
Mapping short to medium size genome reads
#322
ardy20
opened
2 years ago
2
Hisat-3N index not building
#321
ezecalvo
closed
2 years ago
8
Does HISAT-3N work for paired-end slam-seq?
#320
aleighbrown
closed
2 years ago
1
update hisat-3n manual for --CG-only
#319
imzhangyun
closed
2 years ago
0
converting hisat 3N-conversion-table output to CpG methylation counts
#318
mjbyun
closed
2 years ago
10
Error reading _ftab[] array
#317
adamfreedman
opened
2 years ago
6
"Incorrect aux field" error from samtools due to malformed sam output
#316
DaGaMs
closed
2 years ago
2
hisat3n - memory leaks?
#315
DaGaMs
closed
2 years ago
2
update hisat-3n webpage, change --index to -x
#314
imzhangyun
closed
2 years ago
0
support large index for hisat-3n
#313
imzhangyun
closed
2 years ago
0
fix the chromosome finding problem for hisat-3n-table
#312
imzhangyun
closed
2 years ago
0
reference file is not read correctly.
#311
y9c
closed
2 years ago
11
fixed the passthrough problem for hisat-3n
#310
imzhangyun
closed
2 years ago
0
debug for concordant flag
#309
imzhangyun
closed
2 years ago
0
update hisat-3n webpage for hisat-3n-table options
#308
imzhangyun
closed
2 years ago
0
allow hisat-3n change mismatch tolerance, give hisat-3n-table option to add or remove chrname
#307
imzhangyun
closed
2 years ago
0
hisat-3n-table
#306
pillailab
closed
2 years ago
5
update hisat-3n webpage
#305
imzhangyun
closed
2 years ago
0
update hisat-3n webpage
#304
imzhangyun
closed
3 years ago
0
update HISAT-3N to support more conversion type
#303
imzhangyun
closed
3 years ago
0
3ndoc
#302
imzhangyun
closed
3 years ago
0
update HISAT-3N webpage and HISAT2 readme file
#301
imzhangyun
closed
3 years ago
0
update hisat2-readme.md, hisat-3n webpage
#300
imzhangyun
closed
3 years ago
0
Problem with installlation
#299
nebilaj
opened
3 years ago
12
Unexpected output in hisat-3N runs with --un-conc
#298
jhfoxliu
closed
3 years ago
2
Excessive memory use and extreme mapping times for subset of samples
#297
rstewa03
opened
3 years ago
3
update hisat-3n pages
#296
imzhangyun
closed
3 years ago
0
update hisat-3n webpage
#295
imzhangyun
closed
3 years ago
0
extracting splice_sites and exons from gff3 files
#294
eduardopdev
opened
3 years ago
3
Expected or acceptable overall alignment rates
#293
sjfleck
opened
3 years ago
1
`hisat-3n-table` do not count the bases correctly.
#292
y9c
closed
3 years ago
7
many reads aligned discordantly 1 time
#291
soleilll
opened
3 years ago
0
-bash: Hisat2: command not found
#290
Aanchal85
opened
3 years ago
0
exceeded integer bounds, remove adjacent SNPs, use haplotypes, or switch to a large index (--large-index)
#289
shanwai1234
opened
3 years ago
2
How critical is to specify strandness?
#288
Elle-hu
opened
3 years ago
0
adding read group information when multiple FASTQ pairs are provided
#287
jmlivingstone
opened
3 years ago
1
SRA data access requires an additional library
#286
klymenko
closed
3 years ago
2
Conversion table regex error for HISAT-3N: `terminate called after throwing an instance of 'std::regex_error'`
#285
metamaden
closed
3 years ago
4
Previous
Next