Daniel-Liu-c0deb0t UMICollapse issues

Daniel-Liu-c0deb0t / UMICollapse

Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

MIT License

57 stars 7 forks source link

issues

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Does this tool compute a consensus sequence?

#28 xiechangxiao closed 1 month ago
4
UMIcollapse check issue

#27 MardahlM closed 3 months ago
12
Support for pipes

#26 gcambray opened 1 year ago
2
bioconda for nf-core module

#25 CharlotteAnne closed 1 year ago
1
Unable to access jarfile umicollapse.jar when running from another directory

#24 divibisan closed 7 months ago
1
difference in deduplicated read numbers between BAM and FASTQ

#23 ajjeon closed 1 year ago
2
Read duplication ?

#22 karlkashofer opened 1 year ago
1
Please could you add version releases to the repo?

#21 RachelDuffin opened 1 year ago
1
Number of unique reads fastq mode

#20 lisagrigoreva opened 1 year ago
3
2 input fastq files

#19 a-pelissou opened 1 year ago
0
Any chance of making a Conda package?

#18 CharlotteAnne opened 2 years ago
9
fastq processing

#17 MardahlM opened 2 years ago
2
parallelization ?

#16 karlkashofer opened 2 years ago
1
keep unmapped reads

#15 karlkashofer opened 2 years ago
1
Java heap space

#14 karlkashofer opened 2 years ago
4
feature request: option to look for UMI in sam tag

#13 eboyden opened 2 years ago
1
Percentage parameter

#12 gouinK opened 2 years ago
1
Interpreting log output

#11 abracarambar opened 3 years ago
3
can umicollapse be used for single umi and duplex umi data

#10 worker000000 opened 3 years ago
16
fastq file command

#9 abracarambar closed 3 years ago
16
Problem executing umicollapse.jar

#8 osvaldogc opened 3 years ago
3
Subtle annoyances with `umiDist` and `charSet`

#7 Daniel-Liu-c0deb0t opened 3 years ago
0
fastq mode output

#6 coffeebond closed 3 years ago
15
Feature request: deduplication of read pairs

#5 ju-mu closed 3 years ago
5
Memory issues

#4 ju-mu closed 3 years ago
9
java.lang.NoClassDefFoundError: htsjdk/samtools/SamReaderFactory

#3 umasstr closed 3 years ago
1
java.lang.StackOverflowError

#2 cagaser closed 4 years ago
6
umi collapse fails with fastq input

#1 gfialk closed 3 years ago
6