Data-Science-Brigade modelo-epidemiologico-sc issues

Data-Science-Brigade / modelo-epidemiologico-sc

Bayesian epidemiological model, with a focus on the state of Santa Catarina and its micro and macroregions. https://arxiv.org/abs/2104.01133

MIT License

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:tada: script to prepare raw data directly downloaded from boavista site

#65 NataliaDelCoco closed 3 years ago
2
Create script to prepare raw data from BoaVista

#64 NataliaDelCoco closed 3 years ago
0
🤖 Revisit the generative model for multiwave dynamics: add cases first then deaths

#63 jonjoncardoso opened 3 years ago
0
Revise cases likelihood

#62 jonjoncardoso closed 3 years ago
5
[BUG] Fixed epidemic start date lead to unrealistic data fitting

#61 jonjoncardoso closed 3 years ago
0
⚙️ Organize scripts in a more modular and reusable way

#60 jonjoncardoso opened 3 years ago
0
🤡 add script to create mock multiwave dataset

#59 NataliaDelCoco closed 3 years ago
0
Add multiple variants to the inferential model

#58 jonjoncardoso opened 3 years ago
4
How to adequate our equations to include multiple waves?

#57 jonjoncardoso opened 3 years ago
0
🐞 C Stack Usage bug

#56 jonjoncardoso closed 3 years ago
0
🔨 Consider using posterior library to replace model_output$out

#55 jonjoncardoso opened 3 years ago
0
Feature/natalia update start date and reparametrize si

#54 NataliaDelCoco closed 3 years ago
2
⚙️ Allow run_health_regions_A and run_health_regions_B scripts to use init values from previous weeks

#53 jonjoncardoso closed 3 years ago
1
Merge branch 'develop' into feature/natalia-independent-inference

#52 NataliaDelCoco closed 3 years ago
0
🤖 Create a synthetic dataset that emulates multiwave dynamics

#51 jonjoncardoso closed 3 years ago
0
🤔 Find sources on how to model multiwave dynamics

#50 jonjoncardoso closed 3 years ago
5
📇 Add hospitalization data

#49 jonjoncardoso opened 3 years ago
0
🤔 If Google Mobility data had a smaller impact on Rt, would that lead to a better fit of the data?

#48 jonjoncardoso opened 3 years ago
0
📈 Rethink the `cases` likelihood equation

#47 jonjoncardoso closed 3 years ago
2
⚙️ Split microregions in two scripts so they can be run in parallel

#46 jonjoncardoso closed 3 years ago
0
📝 Add name of locality to save_path

#45 jonjoncardoso closed 3 years ago
1
💡 Allow multiple distinct localities to be run in parallel

#44 jonjoncardoso closed 3 years ago
0
📈 Reparametrize fixed and fitted distributions

#43 NataliaDelCoco closed 3 years ago
0
📅 Set start date to 8/mach/2020 to all health and macro regions

#42 NataliaDelCoco closed 3 years ago
0
Consider previously trained model for each region

#41 NataliaDelCoco closed 3 years ago
2
Update `independently` codes to consider previously trained model for each region

#40 NataliaDelCoco closed 3 years ago
1
Feature/natalia independent inference

#39 NataliaDelCoco closed 3 years ago
2
🐛base-reported was still using old EpidemicStart parameter

#38 jonjoncardoso closed 3 years ago
0
🔨 Could model_output$out be removed from model_output?

#37 jonjoncardoso closed 3 years ago
1
🐛Script run_single_region throws an error when model is base-reported

#36 jonjoncardoso closed 3 years ago
0
📇 Redefine versions of epiCata package

#35 jonjoncardoso opened 3 years ago
0
✨Independent inference for each micro- or macro-region

#34 jonjoncardoso closed 3 years ago
2
📝Update Tutorial02 (PT-BR)

#33 jonjoncardoso closed 3 years ago
0
📝Update Tutorial02 (PT-BR): add a simulation that uses Google Mobility

#32 jonjoncardoso closed 3 years ago
0
📝 Relate R/STAN code with the equations in the paper

#31 jonjoncardoso opened 3 years ago
0
📝 Add roxygen documentation to the functions in the R package

#30 jonjoncardoso opened 3 years ago
0
🐛Fixes run_single_region.R

#29 jonjoncardoso closed 3 years ago
0
🐛 run_single_region.R only works with SC_MAC_GRANDE_FLORIANOPOLIS

#28 jonjoncardoso closed 3 years ago
0
🐛 Allow single region runs + Some Bugfixes

#27 jonjoncardoso closed 3 years ago
4
Add tutorials

#26 jonjoncardoso closed 3 years ago
0
Feature/ch11985/pedro modelo sc limpada no código

#25 phcavelar closed 3 years ago
1
Feature/ch11606/pedro agregação semanal

#24 phcavelar closed 3 years ago
1
Feature/ch10973/pedro modelo sc mudar no código para usar o google

#23 phcavelar closed 3 years ago
1
Updated plots' styling

#22 phcavelar closed 3 years ago
0
Pedro/update plots

#21 phcavelar closed 3 years ago
0
Updated some plots' styling

#20 phcavelar closed 3 years ago
0
Updated some plots' styling

#19 phcavelar closed 3 years ago
0
Feature/ch9713/pedro modelo sc retomar a criação do shiny

#18 phcavelar closed 3 years ago
1
WIP Feature/ch8334/pedro modelo sc relatório 18 percentual de ocupação

#17 phcavelar closed 3 years ago
0
Feature/ch7910/pedro modelo sc relatório 17 adicionar uma equação

#16 phcavelar closed 4 years ago
0